G125129


Basic Information

Item Value
gene id G125129
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1762304 ~ 1763325 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU147909
TCTTGATTATTCCCAGTCTCTGGgattctgactcttggttattCCCAGTCTCTGGAGTTTTGATTCTTGATTATTCCCAGTCTCTGAGgttctgactcttggttattCCCAGTCTCTGGAGTTTTGATTCTTGATTATTCCCAGTCTCTGGgattctgactcttggttattCCCAGTCTCTGAAGTTTTGATTCTTGATTATTCCCAGTCTCTGGGATTCTAATTCTTGATTATTCCCAGTCTCTGGGGTTATGACTCTTGGTTAGGGTTCACCTCTTGGCTTAATCCCAGTCTTTTGTATTATGACAATCTGTTAGTCTTTAGGTGTCTTATTCAGTTGTATTCCCAGTATTTGAGCCGTTAACCTTTGGTTGTTACCAGTCTTTAAGTCTGATTCTCAGTTAGTCATGGTTCCCAGAGTTTGGGTTTCTGACTCTCAGTTAGGTTCAATTTTTATAGTTTTG
>TU147910
TCTTGATTATTCCCAGTCTCTGGgattctgactcttggttattCCCAGTCTCTGGAGTTTTGATTCTTGATTATTCCCAGTCTCTGAGGTTCTGACTCTTGGTTGTTCCCAGTCTCTGGAGTTTCGATTCTTGATTATTCCCAGTCTCTGAggttctgactcttggttattCCCAGTCTCTGGAGTTTTGATTCTTGATTATTCCCAGTCTCTGGgattctgactcttggttattCCCAGTCTCTGGgattctgactcttggttattCCCAGTCTCTGGAGTTTTGATTCTTGATTATTCCCAGTCTCTGGgattctgactcttggttattCCCAGTCTCTGGAGTTTTGATTCTTGATTATTCCCAGTCTCTGGGATTCTAATTCTTGATTATTCCCAGTCTCTGGGGTTATGACTCTTGGTTAGGGTTCACCTCTTGGCTTAATCCCAGTCTTTTGTATTATGACAATCTGTTAGTCTTTAGGTGTCTTATTCAGTTGTATTCCCAGTATTTGAGCCGTTAACCTTTGGTTGTTACCAGTCTTTAAGTCTGATTCTCAGTTAGTCATGGTTCCCAGAGTTTGGGTTTCTGACTCTCAGTTAGGTTCAATTTTTATAGTTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147909 False 464 lncRNA 0.40 2 1762304 1763325
TU147910 True 624 lncRNA 0.41 2 1762304 1763325

Neighbor

gene id symbol gene type direction distance location
ndufb11 ndufb11 coding upstream 2968 1755525 ~ 1759336 (+)
def6a def6,LOC107757990,LOC107550223,LOC107700524,LOC107599059 coding upstream 9023 1726808 ~ 1753281 (+)
sin3b sin3b,LOC106613916 coding upstream 35943 1700988 ~ 1726361 (+)
xpr1a xpr1,xpr1a,LOC107755298,LOC107758009,LOC107603171,LOC107699288,LOC107665065,LOC106613915 coding upstream 68451 1628078 ~ 1693853 (+)
lhx4 lhx4,LOC108265829 coding upstream 181577 1562749 ~ 1580727 (+)
si:dkey-6n6.1 LOC108265720 coding downstream 12331 1775656 ~ 1784092 (+)
bgna LOC108265721,LOC107577956 coding downstream 26305 1789630 ~ 1802673 (+)
dedd dedd,LOC108265722,LOC108411641,LOC106572035 coding downstream 45689 1809014 ~ 1811333 (+)
atp2b3a atp2b3a,LOC108265719,LOC107755305,LOC107758015,LOC107699155,LOC107603076 coding downstream 56866 1820191 ~ 1851550 (+)
LOC113535241 LOC108265201 coding downstream 90047 1853372 ~ 1876515 (+)
G125119 NA non-coding upstream 66043 1686319 ~ 1696261 (+)
G125117 NA non-coding upstream 139299 1621257 ~ 1623005 (+)
G125116 NA non-coding upstream 143434 1617620 ~ 1618870 (+)
G125098 NA non-coding upstream 169411 1543836 ~ 1592893 (+)
G125089 NA non-coding upstream 255029 1505026 ~ 1507275 (+)
G125144 NA non-coding downstream 48029 1811354 ~ 1813285 (+)
G125208 NA non-coding downstream 197279 1960604 ~ 1993404 (+)
G125239 NA non-coding downstream 295992 2059317 ~ 2256786 (+)
G125276 LOC108265808 non-coding downstream 406236 2169561 ~ 2171015 (+)
G125312 NA non-coding downstream 488117 2251442 ~ 2252516 (+)
G125062 LOC108265639 other upstream 415719 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 560378 1155413 ~ 1201926 (+)
lonrf1l lonrf1 other upstream 650237 1103715 ~ 1112067 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other upstream 940937 777964 ~ 821367 (+)
G124565 NA other upstream 1056447 704589 ~ 705857 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other downstream 40150 1803475 ~ 1806790 (+)
LOC113535242 glis1 other downstream 113703 1877028 ~ 1987572 (+)
alkal1 LOC108265007 other downstream 452777 2216102 ~ 2232140 (+)
LOC113535041 edem3 other downstream 1082384 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 1573055 3336380 ~ 3347747 (+)

Expression


Co-expression Network