si:ch211-229n2.7 (LOC108265723,LOC103028085,LOC108411637)


Basic Information

Item Value
gene id si:ch211-229n2.7
gene name LOC108265723,LOC103028085,LOC108411637
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1803475 ~ 1806790 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU147915
ACTCAGCTATGTAGCCGTGATTTCTCCAGTTCAACCTGCTCGTCAGGCTTGTGTCAGGATTCTAGATTTCTTTCTCGtgaggaaaacaacaacaacagcggCAATGGATTACAAAGAAcagATGAGACGCAGCTGATGAACACGTTCCGTGGTTACCTGCAGACCATGTTCCCACTGTGCGGTGATCTCCTGCTCGGAGAGACACGGATCCGCCGCCAACAACTTGCAGAAGTCAACGTCCCCAAAGGAGCGCATGTGCTGGTGAGCAACACCCGGCACGCACTGAAACCCTCAGAGCCACAGGATATGAAGCGACGGCGTGACGCCCTGCTGGACAAACAACTTCCTTACAAACTGTTCGCTCAGAACTGCGAACACTTCGCCACATTTGTACGCTACGGAAAAGCAGTGTGTAACCAGATTCCaggaaaaaccaaaaacaaggAATGTGAAGAGGCGACCAAAGTGTTTTCAGACATTGTGTGGAGAGAGACTTCATGACCTGTGACAGACACGGAAAAATCTAACCAGAACAATACACATGCCCTTAACACATAagtcttatttgtttttacagGTTTGCGGTgtgtttcctgctctaacacacctctGCACCTCCTCAGCTcattaacacacctgagtgaGGTGTGTCAGGGCAGGTAAAGCATTAAACCTGGCAGGCTATAGTTAGAAGGGAGGAGCAGTGAAGTTAAATATTTCTAAGCCTAAATATGTATTGTTCGGGTTTCTCTAATgttgcaatttatttatatgtgtgtgggtATTTCACAACGActctaataaaaaatattaattcactgattggtcaatgtgtcattttaataataacaatgataacAATAGTGCTTTTAGTGAGTAATTATAACAGACTAAAATATAGAGACTACAGTACAAAGATCACCCTGCtgtttgcttcttcttcttcttcttcttctttttagcattt
>XM_026928619.2
GTATGTCACACCTACTTCACACACTCAGCTATGTAGCCGTGATTTCTCCAGTTCAACCTGCTCGTCAGGCTTGTGTCAGGATTCTAGATTTCTTTCTCGtgaggaaaacaacaacaacagcggCAATGGATTACAAAGAAcagGTTGCTGAAATCGAAGCCTCCGCCCACTTCGGAGACCTGATTGAATTCGCGTATCCGATTGGCTACTCACACTGGGGCGTGTACGACGGAGACGGATACGTCATTCACTTTGCAGTCGCAGATGAGACGCAGCTGATGAACACGTTCCGTGGTTACCTGCAGACCATGTTCCCACTGTGCGGTGATCTCCTGCTCGGAGAGACACGGATCCGCCGCCAACAACTTGCAGAAGTCAACGTCCCCAAAGGAGCGCATGTGCTGGTGAGCAACACCCGGCACGCACTGAAACCCTCAGAGCCACAGGATATGAAGCGACGGCGTGACGCCCTGCTGGACAAACAACTTCCTTACAAACTGTTCGCTCAGAACTGCGAACACTTCGCCACATTTGTACGCTACGGAAAAGCAGTGTGTAACCAGATTCCaggaaaaaccaaaaacaaggAATGTGAAGAGGCGACCAAAGTGTTTTCAGACATTGTGTGGAGAGAGACTTCATGACCTGTGACAGACACGGAAAAATCTAACCAGAACAATACACATGCCCTTAACACATAagtcttatttgtttttacagGTTTGCGGTgtgtttcctgctctaacacacctctGCACCTCCTCAGCTcattaacacacctgagtgaGGTGTGTCAGGGCAGGTAAAGCATTAAACCTGGCAGGCTATAGTTAGAAGGGAGGAGCAGTGAAGTTAAATATTTCTAAGCCTAAATATGTATTGTTCGGGTTTCTCTAATgttgcaatttatttatatgtgtgtgggtATTTCACAACGActctaataaaaaatattaattca

Function

NR:

description
PREDICTED: HRAS-like suppressor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147915 True 967 TUCP 0.43 3 1803497 1806790
XM_026928619.2 False 961 mRNA 0.47 4 1803475 1806641

Neighbor

gene id symbol gene type direction distance location
bgna LOC108265721,LOC107577956 coding upstream 802 1789630 ~ 1802673 (+)
si:dkey-6n6.1 LOC108265720 coding upstream 19383 1775656 ~ 1784092 (+)
rhoaa LOC108265463,LOC108411640,LOC103028705,LOC107599000,LOC103466989,LOC105890655,LOC108438067,LOC103154239 coding upstream 38433 1759988 ~ 1765042 (+)
ndufb11 ndufb11 coding upstream 44139 1755525 ~ 1759336 (+)
def6a def6,LOC107757990,LOC107550223,LOC107700524,LOC107599059 coding upstream 50194 1726808 ~ 1753281 (+)
dedd dedd,LOC108265722,LOC108411641,LOC106572035 coding downstream 2224 1809014 ~ 1811333 (+)
atp2b3a atp2b3a,LOC108265719,LOC107755305,LOC107758015,LOC107699155,LOC107603076 coding downstream 13401 1820191 ~ 1851550 (+)
LOC113535241 LOC108265201 coding downstream 46582 1853372 ~ 1876515 (+)
tab3 tab3 coding downstream 482661 2289451 ~ 2304783 (+)
prrg1 prrg1,LOC108265743 coding downstream 530551 2337341 ~ 2347459 (+)
G125129 NA non-coding upstream 40150 1762304 ~ 1763325 (+)
G125119 NA non-coding upstream 107214 1686319 ~ 1696261 (+)
G125117 NA non-coding upstream 180470 1621257 ~ 1623005 (+)
G125116 NA non-coding upstream 184605 1617620 ~ 1618870 (+)
G125098 NA non-coding upstream 210582 1543836 ~ 1592893 (+)
G125144 NA non-coding downstream 4564 1811354 ~ 1813285 (+)
G125208 NA non-coding downstream 153814 1960604 ~ 1993404 (+)
G125239 NA non-coding downstream 252527 2059317 ~ 2256786 (+)
G125276 LOC108265808 non-coding downstream 362771 2169561 ~ 2171015 (+)
G125312 NA non-coding downstream 444652 2251442 ~ 2252516 (+)
G125062 LOC108265639 other upstream 456890 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 601549 1155413 ~ 1201926 (+)
lonrf1l lonrf1 other upstream 691408 1103715 ~ 1112067 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other upstream 982108 777964 ~ 821367 (+)
G124565 NA other upstream 1097618 704589 ~ 705857 (+)
LOC113535242 glis1 other downstream 70238 1877028 ~ 1987572 (+)
alkal1 LOC108265007 other downstream 409312 2216102 ~ 2232140 (+)
LOC113535041 edem3 other downstream 1038919 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 1529590 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 1638225 3445015 ~ 3537289 (+)

Expression


Co-expression Network