G125276 (LOC108265808)


Basic Information

Item Value
gene id G125276
gene name LOC108265808
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2169561 ~ 2171015 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU148075
CTTTCACAACAATAGATGCTGTAGTGACCAGACTGCCAGCACAACATTTGTAGGACCCACTATCAGAACTTCTTAGATCATGGATCTTAAGTTGCAGTTCACATCCATCCTGCTTCATTTCATACTTCTCTCCAGGTTTCAAAAGAAGTGCTCCTTTCTTCCACTGCACGGATATTCCAGGTTTCGAGAGCTCACAGCACAGCAAGGCAATTGTACCCTCTTCCACCTCCAGATTTTGTAGCTCCTTACAGAAGAACAAAGGTTTTTCT

Function

NR:

description
PREDICTED: obscurin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148075 True 269 lncRNA 0.43 2 2169561 2171015

Neighbor

gene id symbol gene type direction distance location
LOC113535241 LOC108265201 coding upstream 293046 1853372 ~ 1876515 (+)
atp2b3a atp2b3a,LOC108265719,LOC107755305,LOC107758015,LOC107699155,LOC107603076 coding upstream 318011 1820191 ~ 1851550 (+)
dedd dedd,LOC108265722,LOC108411641,LOC106572035 coding upstream 358228 1809014 ~ 1811333 (+)
bgna LOC108265721,LOC107577956 coding upstream 366888 1789630 ~ 1802673 (+)
si:dkey-6n6.1 LOC108265720 coding upstream 385469 1775656 ~ 1784092 (+)
tab3 tab3 coding downstream 118436 2289451 ~ 2304783 (+)
prrg1 prrg1,LOC108265743 coding downstream 166326 2337341 ~ 2347459 (+)
ccdc181 ccdc181 coding downstream 189939 2360954 ~ 2366245 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding downstream 198324 2369339 ~ 2388945 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding downstream 238310 2409325 ~ 2418955 (+)
G125208 NA non-coding upstream 176157 1960604 ~ 1993404 (+)
G125144 NA non-coding upstream 356276 1811354 ~ 1813285 (+)
G125129 NA non-coding upstream 406236 1762304 ~ 1763325 (+)
G125119 NA non-coding upstream 473300 1686319 ~ 1696261 (+)
G125117 NA non-coding upstream 546556 1621257 ~ 1623005 (+)
G125312 NA non-coding downstream 80427 2251442 ~ 2252516 (+)
G125306 nexn non-coding downstream 90336 2261351 ~ 2265524 (+)
G125308 NA non-coding downstream 109197 2280212 ~ 2313941 (+)
LOC117597827 NA non-coding downstream 113434 2284449 ~ 2286416 (+)
G125344 NA non-coding downstream 131933 2302948 ~ 2303492 (+)
LOC113535242 glis1 other upstream 181989 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 362771 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 822976 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 967635 1155413 ~ 1201926 (+)
lonrf1l lonrf1 other upstream 1057494 1103715 ~ 1112067 (+)
alkal1 LOC108265007 other downstream 45087 2216102 ~ 2232140 (+)
LOC113535041 edem3 other downstream 674694 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 1165365 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 1274000 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 1513878 3684893 ~ 3701703 (+)

Expression


Co-expression Network