G125337 (sh3gl1,LOC108265290,LOC107750655,LOC107700047)


Basic Information

Item Value
gene id G125337
gene name sh3gl1,LOC108265290,LOC107750655,LOC107700047
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2431726 ~ 2432649 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU148151
CTGTGGTCCGGATGGGTGGAGGAGCAGAAACAGGCGTGAAGCCTCCGTTCGACTGCTCGTTGGTTTCTCCGAAGTCGAAGACGGGTTTGGGTTTGGGGACATACTCTTTGCGGGGATGAGACTGGGCCTcgtgaatcctgtctttCAGTTTGTCAGAGAGCTCTTCGAGAATCAGTACAGCCTGTCTGTGATACTGGAGCTGCGCCTCCACCAGTGACGAGAGCTGGCTCACCTGCTCt

Function

symbol description
sh3gl1 Enables identical protein binding activity. Predicted to be involved in central nervous system development and signal transduction. Located in cytosol. Is active in glutamatergic synapse and presynapse. Implicated in acute myeloid leukemia and high grade glioma. Biomarker of high grade glioma.

NR:

description
PREDICTED: endophilin-A2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148151 True 239 lncRNA 0.56 2 2431726 2432649

Neighbor

gene id symbol gene type direction distance location
mpnd mpnd,LOC106591182,LOC107750615 coding upstream 12771 2409325 ~ 2418955 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding upstream 42781 2369339 ~ 2388945 (+)
ccdc181 ccdc181 coding upstream 65481 2360954 ~ 2366245 (+)
prrg1 prrg1,LOC108265743 coding upstream 84267 2337341 ~ 2347459 (+)
tab3 tab3 coding upstream 126943 2289451 ~ 2304783 (+)
LOC117597819 NA coding downstream 208062 2640711 ~ 2642606 (+)
ptgesl ptges2,LOC103370734,LOC104955211 coding downstream 262314 2694963 ~ 2704063 (+)
npl npl coding downstream 464650 2897299 ~ 2906546 (+)
LOC113535040 NA coding downstream 474076 2906725 ~ 2910360 (+)
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding downstream 488217 2920866 ~ 2926332 (+)
G125332 NA non-coding upstream 5395 2421558 ~ 2426331 (+)
G125362 cpox non-coding upstream 72905 2357213 ~ 2358821 (+)
G125334 NA non-coding upstream 80725 2349215 ~ 2351001 (+)
G125308 NA non-coding upstream 117785 2280212 ~ 2313941 (+)
G125497 NA non-coding downstream 217040 2649689 ~ 2651252 (+)
G125483 NA non-coding downstream 240294 2672943 ~ 2675991 (+)
G125484 rgl1,LOC107717560 non-coding downstream 273192 2705841 ~ 2745563 (+)
G125482 NA non-coding downstream 275315 2707964 ~ 2709659 (+)
G125509 LOC108265600 non-coding downstream 286383 2719032 ~ 2721882 (+)
alkal1 LOC108265007 other upstream 199586 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 444154 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 624936 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1085141 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1229800 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 413060 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 903731 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 1012366 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 1252244 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1317855 3750504 ~ 3777490 (+)

Expression


Co-expression Network