G125362 (cpox)


Basic Information

Item Value
gene id G125362
gene name cpox
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2357213 ~ 2358821 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU148183
ggaatgggtGTTTAtagctataacgtaagtgacaacaggaagaAAGACCAGATACATTCATTCTGTAACTTTACAACAACTCCAGCTCTCAAATCTGACGGCTTTTTGAAGTAAAAGCTTTTCATGGCATTATATATCCCGCTTTAGATCCCCAGCGTAGGCGTCACGAGTTCAGAGTGGACCGTATCcaacactgtgtgtatgtgggagAGGAAACGGGAAGTTGTTGCCTCACCGTCTTTCGCCTTCAGCGTTTTCCCGCGGCTGCGCATCTGTTTGGCAGCTTCTTCAGACAGGTGACCGAACACCACCGAGACGTTCACGCCGGCCTTCTCAAACACGTTACTgtcctgtaacacacagctgACCCCTCCGccacCTTCCTCACGGCTCCAGCGGTCCACCTTGAAGGTTCCTCCGTCCACCTCCTCGAGAGCTCTGCAGAACTCAGCCTGGGTCTCCATGATGAGCATCTCCATCCTGCTGCTCATCTCCTGCTTCCTCTGCTCCAGCACGCGCACGTCGGTGACCGGCAGTGACATGAACTTCTTGCATCTCTCCGCGACGtctccttcctcctcttcctccatcttCCTCACCCTGGTTGCCATTTCAGCCTGCTGAAGatgacacacacctgcagccaCGATACCGAACACGCCGGTGGCCATTAACACACCTGTCCTGTATTTACCGGAAGCAGGTGCTCCACGCGCCGTCTCggtcatgttcatgttcacaaACCTTGAAGACCACCTTGTAGACCATCTTCCTCCTGCTACAGAGTGGGATTTATACACGACTCTACACGGCTGAGACACACTGCAGAGTCGCACTGCAGAGCGCAAACTCCTGCTTAAGGTCGACAACAGCAAAGTCATTTTAAACTCTcaacaaaaacagcaataaaaaacCAACAACTAAACTCCCAACACCTCCACAAACTAACTGACTGCCTGCTCGTGTCGCTTCGCACGTACCTCG

Function

symbol description
cpox Predicted to enable coproporphyrinogen oxidase activity. Acts upstream of or within hemoglobin biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial intermembrane space. Is expressed in hematopoietic system; mesoderm; presumptive blood; and ventral mesenchyme. Human ortholog(s) of this gene implicated in hereditary coproporphyria and liver disease. Orthologous to human CPOX (coproporphyrinogen oxidase).

NR:

description
PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148183 True 984 lncRNA 0.52 2 2357213 2358821

Neighbor

gene id symbol gene type direction distance location
prrg1 prrg1,LOC108265743 coding upstream 9754 2337341 ~ 2347459 (+)
tab3 tab3 coding upstream 52430 2289451 ~ 2304783 (+)
LOC113535241 LOC108265201 coding upstream 480698 1853372 ~ 1876515 (+)
atp2b3a atp2b3a,LOC108265719,LOC107755305,LOC107758015,LOC107699155,LOC107603076 coding upstream 505663 1820191 ~ 1851550 (+)
dedd dedd,LOC108265722,LOC108411641,LOC106572035 coding upstream 545880 1809014 ~ 1811333 (+)
ccdc181 ccdc181 coding downstream 2133 2360954 ~ 2366245 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding downstream 10518 2369339 ~ 2388945 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding downstream 50504 2409325 ~ 2418955 (+)
LOC117597819 NA coding downstream 281890 2640711 ~ 2642606 (+)
ptgesl ptges2,LOC103370734,LOC104955211 coding downstream 336142 2694963 ~ 2704063 (+)
G125334 NA non-coding upstream 6212 2349215 ~ 2351001 (+)
G125308 NA non-coding upstream 43272 2280212 ~ 2313941 (+)
G125344 NA non-coding upstream 53721 2302948 ~ 2303492 (+)
LOC117597827 NA non-coding upstream 70797 2284449 ~ 2286416 (+)
G125306 nexn non-coding upstream 91689 2261351 ~ 2265524 (+)
G125332 NA non-coding downstream 62737 2421558 ~ 2426331 (+)
G125337 sh3gl1,LOC108265290,LOC107750655,LOC107700047 non-coding downstream 72905 2431726 ~ 2432649 (+)
G125497 NA non-coding downstream 290868 2649689 ~ 2651252 (+)
G125483 NA non-coding downstream 314122 2672943 ~ 2675991 (+)
G125484 rgl1,LOC107717560 non-coding downstream 347020 2705841 ~ 2745563 (+)
alkal1 LOC108265007 other upstream 125073 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 369641 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 550423 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1010628 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1155287 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 486888 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 977559 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 1086194 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 1326072 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1391683 3750504 ~ 3777490 (+)

Expression


Co-expression Network