G125482


Basic Information

Item Value
gene id G125482
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2707964 ~ 2709659 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU148312
CGCCTGTGAATGAGGACGAATCCGCGGTTCGGCCACGCGCTGCGCCGCGGTAGCGCTGTAAAATGCCGAAACGTTTAGCCTGGTTCTAGTGTCGGTGCTAATCACCGTACAGGAATGCAAGTCCCGTCTGTCTTCCTGGAAGCAGTGACGACTTCCTGTGTGACATCATCAAAGCACGGCGTGCTCACGTAGCTGAAGAAAACACAGATAACGGACGGCGTTTCCATGTGTCCGGCATTCGCTGGTCTGCTGGTGGTCAGGAATATTTGTGGTCgacaaaagaaataatatttgCTCCGGAGCGAAGGCGTCCAAGATTCGATTTACTCTCCGATTTACTTTCCTCCCGTGTTTGTGCTCGGATCATCGCAATCATGTTGTGCTTCGATTCGATGGATAGTCTCTTGTCTGTGGCTCAGCCGCATCAAATAATCGAAAGATTAAGGACAaagctgggtttttttccctcccGCTACATGCTTCCAGCACAACTCGAgcaaatgaaaattttaaaaaataataataataataataataataataataataaataggaCGCAATCACACAATTCGAGCTAActacaatatattaatatagaTCCTCTGATAACGCTTTCATACGCTCATTAAAGCAGGAACGGGGAAAAAGCGGAAAAGAAACAAATCTGTCACTCgttcactcacacacgcactcactcTAAGTGAAAGAGAAGCTCTGGAAACTGATAAATCGACAACATgtcagaagagaaaaaaaaagaaatcataaaagGACTAAAATAAGGGATGAAATCTCCGTCCCATAAACCTCCTGCTCCCTTTTCTCAGAGATCACACCAATTAATCCCAAATCCCGAAAAAACGTAAACGTAAACGTCCTCcctcccaaaaaaacaaaccaaaaatgccCACCAGACCCCCGAGTGCTGCCCCTGACTCtcgaccacacacacacacacacacacacacacacacacacacacacacacactgttatgtCACTCTAAGAGAGAGTCGGGGAAGACGTGGGGTTTCAGGGCAGACGTGTGCAGCGCTTCTTCCTACCACGGAGAAATGGAGCCGTATCACAAATCGGCATTGTTCTGATAAAACCTGCAGGtcaaacacatttctgtttttttttttttttttaatcatcagtcCTCATAACTTCTGGATCTTCTCTGCCACCACGATGGGGTTCTCTTTGCGGATCTGAGCGGCCGCTGCTCCTCTGTAATCGTACGGACAGTCGTGTTTATCCGAGTAGCGGTGGATCGCACAGAACAGGTTACCACAGCGACAGTCGAagcctagagagagagagagagagagagagagagagagagagagagagagagagaaggagagagagagagagacaagaggagagagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148312 True 1416 lncRNA 0.46 2 2707964 2709659

Neighbor

gene id symbol gene type direction distance location
ptgesl ptges2,LOC103370734,LOC104955211 coding upstream 3901 2694963 ~ 2704063 (+)
LOC117597819 NA coding upstream 65358 2640711 ~ 2642606 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding upstream 289009 2409325 ~ 2418955 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding upstream 319019 2369339 ~ 2388945 (+)
ccdc181 ccdc181 coding upstream 341719 2360954 ~ 2366245 (+)
npl npl coding downstream 187640 2897299 ~ 2906546 (+)
LOC113535040 NA coding downstream 197066 2906725 ~ 2910360 (+)
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding downstream 211207 2920866 ~ 2926332 (+)
notch2 LOC108265554 coding downstream 241762 2951421 ~ 3031725 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding downstream 326570 3036229 ~ 3055064 (+)
G125483 NA non-coding upstream 31973 2672943 ~ 2675991 (+)
G125497 NA non-coding upstream 56712 2649689 ~ 2651252 (+)
G125337 sh3gl1,LOC108265290,LOC107750655,LOC107700047 non-coding upstream 275315 2431726 ~ 2432649 (+)
G125332 NA non-coding upstream 281633 2421558 ~ 2426331 (+)
G125362 cpox non-coding upstream 349143 2357213 ~ 2358821 (+)
G125509 LOC108265600 non-coding downstream 9373 2719032 ~ 2721882 (+)
G125525 NA non-coding downstream 32339 2741998 ~ 2742284 (+)
G125593 NA non-coding downstream 145098 2854757 ~ 2855775 (+)
G125626 NA non-coding downstream 284191 2993850 ~ 3227664 (+)
G126401 NA non-coding downstream 859330 3568989 ~ 3575303 (+)
alkal1 LOC108265007 other upstream 475824 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 720392 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 901174 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1361379 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1506038 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 136050 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 626721 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 735356 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 975234 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1040845 3750504 ~ 3777490 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2209154 NA non-coding NC_050570.1 CM025857.1 19173627 ~ 19174111 (-)