G125484 (rgl1,LOC107717560)


Basic Information

Item Value
gene id G125484
gene name rgl1,LOC107717560
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2705841 ~ 2745563 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU148315
gtatataatatctcaatataaatacacctgttcctggaagaacccagagtttgcTGGAGAACATACCTAATCGCACAGCAGCGTGAAGACCTGGCCATGAAGGAGCTACCAAACCAGATCCACTGACAGCCAGTGAGCGGGTGAAGAGAGACCAAGGGGATGGAGAGAGCCACAGCTCAGAGGGGAGAAGGATAATCACAAAGCTGGACTTTATGGAAAAGTgatgagaagaaaaaataagaaaaggaaaaaaaaatcagaatattgGAGACTTAACAAAAGTTCTCTAGTCTGATAAGACCAAAGGTGAATTTTTCAGCCTTGGCACTAAAACAACAtcgctcatcaccctgagaaagCCATCcctactgtgaagcatggtggtggcagcatcatgttcgGCGTTCCCCTCGgtctcttggttgcttctctgactaatctcTTTTTTATCCCTCTTTTCACTGGCTTTCGGTGGATGTTCTCATCCTCGAGGCAGAGCtgcagttgtgccatattctttccatttattttttaaataatggcttTAAATGTTGCTCTGCAGGATGTctgggatatttttttataatcaaatgttgcttgatacttttccagaactctGTCCTGGATTTCTTTTGATTGCTGCTTGGTTTTCATGATGCTGTGTTttggtatgttctctaacacactctaGAGATCCTGAGATATTGTAGATGCGACTTCTGATGGCGACTGGCTGCACcggaactaatttaggggttttcCATACTCCGGTGCTTcacctttgtgttttatttgtaaataattttatgaaCTATATATAGATATTCCCTGCCgttcaatattatgggctattttgtaaAGATTGATGACATGATCCCAGTTAAggccatttcagttccaggttgtagcAGTACAAAACGTGAAAAAggtcaagggggtgaatacttatgcaatgcGTTTGCACATTATTCATCGAAATAAAGGTTAAGTCGAAGACCGAGTCATGCTTCCATTTGAACAACAGAATAAATGTAACTTGAACactaactacatttttaaaatctgtttatctgttaaAAGGTTAAATGGTAAGGATGGGATGATGAGTCTTAAGCGTTTACTTAACTTCAAAATTCAAACCCCTTGagtcaaattttaattttaaagttctCTATTAGTTAATGCGATTCTCTATAATCTTGCGTTGCTGCCATTTTATTTGATCAGTCAACAATAAAACGTGcaccttcctccctccctcacgAATCACGCGTTGCTGCTTACTGCCCCGCCCCCTCATCTGATGGACAGCTGTGATCCTCCTACTCTTCTGGAAGCTGATGAAAGCTCGAGGCATGTGGACGGCCCTCAAGCAGTTCGGACGAAGAATTTAGAAATGAATCGTCCCAAAACAGGAGGGAATAGACATGTAAAGAGAGGAAGAAGTGCGTAGGTGCACTAAAGTTATTTCCATATTTATGCAAACCAGGTCGTTTTATTTGGGTCAAACCTTCTCTCTTTGTGCCTTtgattagttttaaaaaaacaaatgaaaacgttaaaagtctttaaaaaaaaaaaaacacacacacacccccacacacacacacacacccacacacacacacacacacccacctgtcGAGCAGCAGCTGCAGGACGTTGTGTGTGCCGGCGAAGGCTCTGTAGGTGGACAGGAAGATGCTGGTGTAGGTGAGATCGTTATCACCGAAAGCTGTGAGCAGAGTCTCCACGAGCCGCTCCAGCGTCCCTGCACGAATACTGCGGATCTTACACGTCTCTAACTGACTGACTGTGTGACCCGGGGGCAACCGATCGCCCTCCGCCTGAGacagggagcgagag

Function

symbol description
rgl1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RGL1 (ral guanine nucleotide dissociation stimulator like 1).

NR:

description
PREDICTED: ral guanine nucleotide dissociation stimulator-like 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148315 True 1866 lncRNA 0.43 2 2705841 2745563

Neighbor

gene id symbol gene type direction distance location
ptgesl ptges2,LOC103370734,LOC104955211 coding upstream 1778 2694963 ~ 2704063 (+)
LOC117597819 NA coding upstream 63235 2640711 ~ 2642606 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding upstream 286886 2409325 ~ 2418955 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding upstream 316896 2369339 ~ 2388945 (+)
ccdc181 ccdc181 coding upstream 339596 2360954 ~ 2366245 (+)
npl npl coding downstream 151736 2897299 ~ 2906546 (+)
LOC113535040 NA coding downstream 161162 2906725 ~ 2910360 (+)
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding downstream 175303 2920866 ~ 2926332 (+)
notch2 LOC108265554 coding downstream 205858 2951421 ~ 3031725 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding downstream 290666 3036229 ~ 3055064 (+)
G125483 NA non-coding upstream 29850 2672943 ~ 2675991 (+)
G125497 NA non-coding upstream 54589 2649689 ~ 2651252 (+)
G125337 sh3gl1,LOC108265290,LOC107750655,LOC107700047 non-coding upstream 273192 2431726 ~ 2432649 (+)
G125332 NA non-coding upstream 279510 2421558 ~ 2426331 (+)
G125362 cpox non-coding upstream 347020 2357213 ~ 2358821 (+)
G125593 NA non-coding downstream 109194 2854757 ~ 2855775 (+)
G125626 NA non-coding downstream 248287 2993850 ~ 3227664 (+)
G126401 NA non-coding downstream 823426 3568989 ~ 3575303 (+)
G126408 NA non-coding downstream 884239 3629802 ~ 3631632 (+)
LOC117597831 NA non-coding downstream 973779 3719342 ~ 3735098 (+)
alkal1 LOC108265007 other upstream 473701 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 718269 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 899051 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1359256 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1503915 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 100146 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 590817 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 699452 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 939330 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1004941 3750504 ~ 3777490 (+)

Expression


Co-expression Network