G125497


Basic Information

Item Value
gene id G125497
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2649689 ~ 2651252 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU148329
ACTGTACTGAAATAATGCActcagtgttgaattaacattgcattgcattaacacagtgttgaattaacaccatACTGAACTGACACAGCATTTAATTAACACTGCATTAAATTAACACCTGGCACTGTGTCCAGTTACATCTCCACATTCGATGATGAATTAACACCGAACTCACGTTGAGTATCTGATTTAACCTCTAGCACTGTATTTAATGACGTCACTCTGCgaattacattaacacagtCCTGTACTGACACAGTATTTCATTAGCACTGCATTAAATTAACACCCAGCGCTGTGCGGAACTGAAGCACTTCCACTGAGATGcggtgttaattcagtagtcAGGGTGCTGAATTCTCAGCGTactcaatacacacactctggtACTGAATGAAAGCACTTAGTGCTGAACTGAGATGTAACTGAACACAGTGATGTAAAGCAgagtactgaattaacacagTACTGAATTAATGTTGCATTAAATTAACATCTTCCAGAGTACTGAATTAGAGCAttatttaattagcattttaattagTGCTGAACTGAGATGTAACTGAACACAGTGATGTAAAGCAGAGTACTGAATCAGAGCAttatttaattagcattttaattagTGCTGAATTGCGTCACTTAGCAGCGAAGTCCtgaatgaacacattaacacactactGAACTACCAGTCAGCCTTCATTCAGCACTTCACCGGAAAGCCGTGTGTGAGGATGAGTAAGCACGCGCGCACTCACCGGTTCTCCGTAAGTGAAGCTGTAAACACGCGCGCTCCTCACGTCTCGAGCTCGCGGACGCCAAATAAAtccacgcaaacacacacacaccttcactgaccgagaagtgaaaaaaaaaagaagacgaagaagaagaagacgtgGAAGGAAAGTCAAAGCTCCTCTTGTCTCGCGCACCTGTCCAAGTGCGGGTCGGATAGCGCGCGCCGCCGCCGTGCCATGCTGGATCAAGACAACTGTCGCGCGCGCGGCTTGTCCGTTTGCCGTTTGCCGTTTGCTTGGCTGACACACACAagtcaaaacacaaaacacacacacacacgcagcagcagcagcacctgtcccgagagaaacacacacactcactcacacacactcactcactcacacacacacacactgctccctGTGTGCTGGTGCTCAGCATGTGGCGCTCCGCG
>TU148331
ACTGTACTGAAATAATGCActcagtgttgaattaacattgcattgcattaacacagtgttgaattaacaccatACTGAACTGACACAGCATTTAATTAACACTGCATTAAATTAACACCTGGCACTGTGTCCAGTTACATCTCCACATTCGATGATGAATTAACACCGAACTCACGTTGAGTATCTGATTTAACCTCTAGCACTGTATTTAATGACGTCACTCTGCgaattacattaacacagtCCTGTACTGACACAGTATTTCATTAGCACTGCATTAAATTAACACCCAGCGCTGTGCGGAACTGAAGCACTTCCACTGAGATGcggtgttaattcagtagtcAGGGTGCTGAATTCTCAGCGTactcaatacacacactctggtACTGAATGAAAGCACTTAGTGCTGAACTGAGATGTAACTGAACACAGTGATGTAAAGCAgagtactgaattaacacagTACTGAATTAATGTTGCATTAAATTAACATCTTCCAGAGTACTGAATTAGAGCAttatttaattagcattttaattagTGCTGAACTGAGATGTAACTGAACACAGTGATGTAAACAGAGTACTGAATCAGAGCAttatttaattagcattttaattagTGCTGAACTGAGATGTAACTGAACACAGTGATGTAAAGCAGAGTACTGAATCAGAGCAttatttaattagcattttaattagTGCTGAATTGCGTCACTTAGCAGCGAAGTCCtgaatgaacacattaacacactactGAACTACCAGTCAGCCTTCATTCAGCACTTCACCGGAAAGCCGTGTGTGAGGATGAGTAAGCACGCGCGCACTCACCGGTTCTCCGTAAGTGAAGCTGTAAACACGCGCGCTCCTCACGTCTCGAGCTCGCGGACGCCAAATAAAtccacgcaaacacacacacaccttcactgaccgagaagtgaaaaaaaaaagaagacgaagaagaagaagacgtgGAAGGAAAGTCAAAGCTCCTCTTGTCTCGCGCACCTGTCCAAGTGCGGGTCGGATAGCGCGCGCCGCCGCCGTGCCATGCTGGATCAAGACAACTGTCGCGCGCGCGGCTTGTCCGTTTGCCGTTTGCCGTTTGCTTGGCTGACACACACAagtcaaaacacaaaacacacacacacacgcagcagcagcagcacctgtcccgagagaaacacacacactcactcacacacactcactcactcacacacacacacactgctccctGTGTGCTGGTGCTCAGCATGTGGCGCTCCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148329 False 1198 lncRNA 0.45 3 2649689 2651252
TU148331 True 1279 lncRNA 0.44 3 2649689 2651252

Neighbor

gene id symbol gene type direction distance location
LOC117597819 NA coding upstream 7083 2640711 ~ 2642606 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding upstream 230734 2409325 ~ 2418955 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding upstream 260744 2369339 ~ 2388945 (+)
ccdc181 ccdc181 coding upstream 283444 2360954 ~ 2366245 (+)
prrg1 prrg1,LOC108265743 coding upstream 302230 2337341 ~ 2347459 (+)
ptgesl ptges2,LOC103370734,LOC104955211 coding downstream 43711 2694963 ~ 2704063 (+)
npl npl coding downstream 246047 2897299 ~ 2906546 (+)
LOC113535040 NA coding downstream 255473 2906725 ~ 2910360 (+)
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding downstream 269614 2920866 ~ 2926332 (+)
notch2 LOC108265554 coding downstream 300169 2951421 ~ 3031725 (+)
G125337 sh3gl1,LOC108265290,LOC107750655,LOC107700047 non-coding upstream 217040 2431726 ~ 2432649 (+)
G125332 NA non-coding upstream 223358 2421558 ~ 2426331 (+)
G125362 cpox non-coding upstream 290868 2357213 ~ 2358821 (+)
G125334 NA non-coding upstream 298688 2349215 ~ 2351001 (+)
G125344 NA non-coding upstream 346197 2302948 ~ 2303492 (+)
G125483 NA non-coding downstream 21691 2672943 ~ 2675991 (+)
G125484 rgl1,LOC107717560 non-coding downstream 54589 2705841 ~ 2745563 (+)
G125482 NA non-coding downstream 56712 2707964 ~ 2709659 (+)
G125509 LOC108265600 non-coding downstream 67780 2719032 ~ 2721882 (+)
G125525 NA non-coding downstream 90746 2741998 ~ 2742284 (+)
alkal1 LOC108265007 other upstream 417549 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 662117 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 842899 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1303104 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1447763 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 194457 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 685128 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 793763 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 1033641 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1099252 3750504 ~ 3777490 (+)

Expression


Co-expression Network