G125509 (LOC108265600)


Basic Information

Item Value
gene id G125509
gene name LOC108265600
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2719032 ~ 2721882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU148346
ctctctctctctctctctcactctctctctctcactctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcctctctcctctctctctctctctctctctctctctctctgtacctgtGTGAGCTGGTTTCGGCTCTGTTGGAGCAGCAGCGGTGTGACCGTCTTGGTTTTGCCGAGGGATGAGTGCAGCTCTTCGGCTGAATGCCGTGCGTTCTGCAGCTGCTCCTGTACGGTGCTGGGGAGACCCTGAACGCTGGACACGACGCCTGAACACGCCACACGCAGCTGCTCGCTCAGAGCACGCACCATGGACAGAGCTCGCCATTCCAGCTGCTCTCCGTTCTCCTTGCCGTCCTCTCCGCCGTCCTCCTCTGTGCTTTCTGCCCCGTGCCCCTGCCTGTGTTCTTCCTGCCCCTCCTGTCTCCACTCCCTCCACCTCTTGAGGAGTTGCTCTGGTGCTCGCCCCAGCGTGTTGGCTCCTCGCAGGTTCTCCAGCAGGTCCAGGGTGCTGGTGATTTGGGATACGGCTTTGTGAGTGGCGTCTCGAGCCACGCTGGCTTTAATGAGGGACAGCTCCAGCGCTCGCTCTTGAACCTGGGCTGAGAGTTTCCCCAGGCGCACAAAGTagctgggggcggagctttgagaggccacgccttcgtTGCTCAGTGAGGTTTCGACCTCATCCTTCGGCAGAGGCTCTGCTACA
>TU148348
TGTAAAGCCAAATGATTCACTAGTAATTCTATAGTAAAACCAAATGATTCACTAGTGATTCTATATATAAAGCCAAATGATTCACTAGTGATTCTTTAGTAAAGCCACATGACTCACTAGTAATTCTATGGTAAAGCCAGATGATTCACTAATGATTTCTGTCGTAAAGCCATATGATTCACTAATGATTCTTTAGTAAAGCCATATGATTCACTAATGATTCTTTAGTAAAGCCAGATGATTCACTAATGATTCTTTAGTAAAGCCAGATGATTCACTAATGATTTCTGTGGTAAACCCAGATGATTCACTGTGTTTTCTATTCTCTGTTAAAACCTACTGTCAGTAGGTCAAATAATTCAGTGGCACGGCTGAATGATTCATTAGTGATTTAAGCGTAAATGTTCTACTGATTATCCCGTGGTCACAGTGCAGGTAAAAGAGTTTACATAAAATAACTGAAGgcacatttgaatgttttattttttgttaaatgttttattcatgttttattttttctaagcGATACTCTGCGCTCGGCTGTTTCTCCGTCAGCTGGGGTGAAAAAGGCCCGACTAACCAGTTGAGAGGAGTGTTATTCAGGAGATACTCCATCACTCCGTCCAGTGACTGTCTCACctgtGTGAGCTGGTTTCGGCTCTGTTGGAGCAGCAGCGGTGTGACCGTCTTGGTTTTGCCGAGGGATGAGTGCAGCTCTTCGGCTGAATGCCGTGCGTTCTGCAGCTGCTCCTGTACGGTGCTGGGGAGACCCTGAACGCTGGACACGACGCCTGAACACGCCACACGCAGCTGCTCGCTCAGAGCACGCACCATGGACAGAGCTCGCCATTCCAGCTGCTCTCCGTTCTCCTTGCCGTCCTCTCCGCCGTCCTCCTCTGTGCTTTCTGCCCCGTGCCCCTGCCTGTGTTCTTCCTGCCCCTCCTGTCTCCACTCCCTCCACCTCTTGAGGAGTTGCTCTGGTGCTCGCCCCAGCGTGTTGGCTCCTCGCAGGTTCTCCAGCAGGTCCAGGGTGCTGGTGATTTGGGATACGGCTTTGTGAGTGGCGTCTCGAGCCACGCTGGCTTTAATGAGGGACAGCTCCAGCGCTCGCTCTTGAACCTGGGCTGAGAGTTTCCCCAGGCGCACAAAGTagctgggggcggagctttgagaggccacgccttcgtTGCTCAGTGAGGTTTCGACCTCATCCTTCGGCAGAGGCTCTGCTACA

Function

NR:

description
PREDICTED: perilipin-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148346 False 747 lncRNA 0.59 2 2720315 2721882
TU148348 True 1234 lncRNA 0.48 4 2719032 2721882

Neighbor

gene id symbol gene type direction distance location
ptgesl ptges2,LOC103370734,LOC104955211 coding upstream 14969 2694963 ~ 2704063 (+)
LOC117597819 NA coding upstream 76426 2640711 ~ 2642606 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding upstream 300077 2409325 ~ 2418955 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding upstream 330087 2369339 ~ 2388945 (+)
ccdc181 ccdc181 coding upstream 352787 2360954 ~ 2366245 (+)
npl npl coding downstream 175417 2897299 ~ 2906546 (+)
LOC113535040 NA coding downstream 184843 2906725 ~ 2910360 (+)
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding downstream 198984 2920866 ~ 2926332 (+)
notch2 LOC108265554 coding downstream 229539 2951421 ~ 3031725 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding downstream 314347 3036229 ~ 3055064 (+)
G125482 NA non-coding upstream 9373 2707964 ~ 2709659 (+)
G125483 NA non-coding upstream 43041 2672943 ~ 2675991 (+)
G125497 NA non-coding upstream 67780 2649689 ~ 2651252 (+)
G125337 sh3gl1,LOC108265290,LOC107750655,LOC107700047 non-coding upstream 286383 2431726 ~ 2432649 (+)
G125332 NA non-coding upstream 292701 2421558 ~ 2426331 (+)
G125525 NA non-coding downstream 20116 2741998 ~ 2742284 (+)
G125593 NA non-coding downstream 132875 2854757 ~ 2855775 (+)
G125626 NA non-coding downstream 271968 2993850 ~ 3227664 (+)
G126401 NA non-coding downstream 847107 3568989 ~ 3575303 (+)
G126408 NA non-coding downstream 907920 3629802 ~ 3631632 (+)
alkal1 LOC108265007 other upstream 486892 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 731460 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 912242 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1372447 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1517106 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 123827 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 614498 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 723133 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 963011 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1028622 3750504 ~ 3777490 (+)

Expression


Co-expression Network