LOC113535041 (edem3)


Basic Information

Item Value
gene id LOC113535041
gene name edem3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2845709 ~ 2918231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU148427
CAAACATGCCTGTACCATTTATTGCACACAGTGCACGGATTTCCACCTTTTCATACAAATTTCTTCATATCGTctcatttaaaaagtgtgaaaccgtcattttttttaaaaatccagtttatGATGTCCTGTACTTTGCTCCTGGCTCTTCTGTTCAGTCTCTTCTATTCAGTCGGTGAGGGGTGTGAAAATGGCGCCCCCTGGAGGATGAAGGTGCGTTTGGGCCCACGTTTGGCAACGAAAGAAAGGTTGCATATCTTTTCAGTTTGTGCCTTTTACTCTCCAGGAAACACACACCTGAGGGCTGATTAATGCTCAAGACAAACACAGGCCCTGGTCCTTAGATACTTCTTCCCAAGTTAGCAGCTGACTCGACAGCTGGAGTTGCTCTTTTCTCTGACTGGCTCCCACatagacaaaaacacacacacacacacacacacacacacacacg
>TU148429
acacacacacgcacgcacgcacacacacacacacacacacacacacacacaagctGCAGAGTTACACGGAGTGTTTGAGGAACGGTTCACCGAAATTTAACATGTTTCACCTCAGCATAAATGTGATCGATAAACCGAGATATGATTAGTTTGCTTCTTTCGTTTTGCAGGGCTGATGTAGCTCACAAGTAATAGAAGTCTATGTGAATagaattttttccccataaaaaacaataaatcttcACGGATAAAGGTTTTCACAATAATAAGAATAATCAGCGTTTACAAATTTGGCTTCAGGCTTTCTGCTACCGCCTTTAAACAAGAAGTCAAAATGATAGAAAATCTCACTACGAGTTTCCGACATTCAGCTACACGGTgacattttgcttatttctgGATTATAGAGGCTCTAAATCACATCAGCAAATTATTAGTGAATAACTCGGATATTAGTACACATGCTAATTCATGGATCTAGTGCCAATTTGTACAAATTTATCGAAACAAATGTTATATATGGTCACCAGAATTCGCAGACAAGTACGctgtgtaaatttaattttgcGATGAACCGTTCCTTTACAGGTAAGCTTGACGAGAGGCAAAACTCAGGACTAAAAGGTTGATTCTCAAGTTGATGTTCCAGAAATGACAGACACAAAAACCCAACATACatcaaatacatatatacatacagtcgAATCAGTCCAAAGAGTTCATACGATCTTCTGATTTTCCACGTATAACCGTAACAGCTGTGTAAACTCTCCCGTTCATTAACCATCAGTCTGCAAATCACTTCAAATTAACGTCCATCACTCAACCCCATGGATTAATAAACACGGATTTGGAAGAAGGAAGACGTACAATAagacgagacgagacgagacaGGAGACGAGACAGTTTGGTCTTGAGTTTGGTTACAGGTGGAGGTTAAAGACGTACGTTTGCACAGGTGAGCATTTCTGCTCCTGAAAAAGCACCTGAGAATGACGCCTTCGTCTTCTGTCCTGTACACCAGGTGTGTCccaaagtgtctttttttttttttctttaaataattatgGCTCTGTTCTGTGACCCGTTCCTGGAGTCCAAGGTCAAAGTTCATCGTTCTCCATCTGTTTAAACGCCTCCAAGTCCTCCTGCCAATCGGCCATTAAAGAGTCCACCGATTGGTCGTTAGGATCCTCGTCTTCTGCAGGCTCCTCCTCCACGGTCAGAGGTACGTCGTTGCTACGCCCCTCCTCCTGCTTTCCTGTCTCCTCACCCGCTATATCTTGGCCCTGGgtggtggattgtgattggtcaggtgttgacGAGGGGGCGGGATGACCGTGGTCCTCCTCGCAGCAGCCCTCCTCCTCGCCTTCCT
>TU148431
gcacacacacacacacacacacacacacgcacacacacacacaagctGCAGAGTTACACGGAGTGTTTGAGGAACGGTTCACCGAAATTTAACATGTTTCACCTCAGCATAAATGTGATCGATAAACCGAGATATGATTAGTTTGCTTCTTTCGTTTTGCAGGGCTGATGTAGCTCACAAGTAATAGAAGTCTATGTGAATagaattttttccccataaaaaacaataaatcttcACGGATAAAGGTTTTCACAATAATAAGAATAATCAGCGTTTACAAATTTGGCTTCAGGCTTTCTGCTACCGCCTTTAAACAAGAAGTCAAAATGATAGAAAATCTCACTACGAGTTTCCGACATTCAGCTACACGGTgacattttgcttatttctgGATTATAGAGGCTCTAAATCACATCAGCAAATTATTAGTGAATAACTCGGATATTAGTACACATGCTAATTCATGGATCTAGTGCCAATTTGTACAAATTTATCGAAACAAATGTTATATATGGTCACCAGAATTCGCAGACAAGTACGctgtgtaaatttaattttgcGATGAACCGTTCCTTTACAGGTAAGCTTGACGAGAGGCAAAACTCAGGACTAAAAGGTTGATTCTCAAGTTGATGTTCCAGAAATGACAGACACAAAAACCCAACATACatcaaatacatatatacatacagtcgAATCAGTCCAAAGAGTTCATACGATCTTCTGATTTTCCACGTATAACCGTAACAGCTGTGTAAACTCTCCCGTTCATTAACCATCAGTCTGCAAATCACTTCAAATTAACGTCCATCACTCAACCCCATGGATTAATAAACACGGATTTGGAAGAAGGAAGACGTACAATAagacgagacgagacgagacaGGAGACGAGACAGTTTGGTCTTGAGTTTGGTTACAGGTGGAGGTTAAAGACGTACGTTTGCACAGGTGAGCATTTCTGCTCCTGAAAAAGCACCTGAGAATGACGCCTTCGTCTTCTGTCCTGTACACCAGGTGTGTCccaaagtgtctttttttttttttctttaaataattatgGCTCTGTTCTGTGACCCGTTCCTGGAGTCCAAGGTCAAAGTTCATCGTTCTCCATCTGTTTAAACGCCTCCAAGTCCTCCTGCCAATCGGCCATTAAAGAGTCCACCGATTGGTCGTTAGGATCCTCGTCTTCTGCAGGCTCCTCCTCCACGGTCAGAGGTACGTCGTTGCTACGCCCCTCCTCCTGCTTTCCTGTCTCCTCACCCGCTATATCTTGGCCCTGGgtggtggattgtgattggtcaggtgttgacGAGGGGGCGGGATGACCGTGGTCCTCCTCGCAGCAGCCCTCCTCCTCGCCTTCCT
>XM_026928127.2
cacacacacacacacacacagctccgtTAGACTCAGACTCAGTGTGAGGAGCTCTGTAAGCTCAGTTTTGGTGATTGTATTGAGGCAGCGCTATGGTTTTAAGCACTTTGTGAATGGATGCTTGGATGCTGGTGTTTATGTGCCTCCTGATGCCAAGCTCTGGGGTTTTTGTGTTCTTCCATCATTACtgtacttctctctctctctctctctctctctctgtctttcagcacTACCACATTACCTCATAAATATCTTTGCCAGTCCTCCATGTGCAATTCACACAGGGTGCAACATTTGTCTTGGAAATTGTGACTGTTTATCAGTAAGGAGTTTTGACCCAGTATTTGACTATAGCACTTCTGGGGAATGCCAACAAGAGCAAataggtctcacacacacacacacacacacacacacacacacacacacacgttagtgTAGTTGAAATTGAATGACCCGATGGAGTGtgagcagtgagacagaaataattttaaactcATGAAAACACGCAGCACGATTAAACACTTGACCACGCTGACCAGATCTTGGCACTAAACCCCATACAAGCAGAAAATTCCAATTTTTACTCTTTCCAAAATAAGTGTGCCAAAATGCCGTTCAGGAAACAATCActtcctcaccagtctctcttttgtctctctcttaaagttaagaAGACAAAGAAGTTACTCATTACTGCGAAAACCACAAAACTTAAACTCCTGTTGATGTTCCTGTGGTAGAAAACTTGATGACttttacagagcactgacactggagactccttccataaacgttaaataaacgttcGCTCATAggaaacttcaccgtatcaataAAACCTTCCTGTACATAAAGAAGAAGAGTTTAGGAAAACACCAGTAGCTTGTATCAGGTTTAGAAAAACACCAGTAGCTTGACCTTAACACagaacatcacatcacacctaGTCCCATCTGTTCTCTGTTTGGAtaaacatgagagagagagagatagagagagagagagagagagggaagggggGCAATATATTTTAAGAGTTGCAGTGTGGTTTGGTCGGAGAGCGTTGTCATTCAGGTCTGTTAGTCATTTTTAGCTCGGTTAGACTCAGACGCAGTGTAAATTGCCCCGTAAGCTCTGTTTTGGTGACCGTGGCAGCACTATGGTTTCCAGCACTTTGTGGATCTTGGCTCGGATGCTGGCGTTTGTGTGCCTCCTGATGCCAGGCTCTGGGTTCCTGCTGCTGCGTGAAGGGGAAAAATGTGGAGGCTTCATCGAGGGCATGTGTGAGTCCGacttcctctgtctgtctgatgaACCCAAGGACGAGAACATCTATGTAGAAGGAGTGTGCACCAGGGTTCCAGCTTGTAACTGCTCCGAGTTCCAGTGTCCGCCACGGCGCCGCGGTGACCGTCGCAGCGGTGTAGCGACCGATCCGTGTGGGTGTTGCGTCCACTGCGCCAAGCAGAAGGGGCAGGTGTGCGGTGGCCCGAGTTGGAGATGGGGTTACTGCGATCAAGGATTGATTTGCTCCCTTGTAGTGGGAATGGATTCTGCCAGAGCTCCACAGATAGGCGTGTGCAAAGagGTACCAGATCACCTCATTGAAAATTTCACAGCTATCCTGTGTCCAATTCGTACAGGTTGCAACATTCATGTTGGAAATTGTGACTGTTATTCGGAACAGTCCTGTCATTCGTTGTTCCGTTACAGCACCTTTGAGCAATGCCGGCAAGATCAAATAGATGAAGAAATACACTACATCACCGGAGAGCTTCCCAAAAGAGACAGAcctgcatatgtgtgtatggagtgGGGTTGTGAGGTTCAGggctgccagtgtgtgtgtcaggagagAAAGTGCGACTACAGGACAACCCCACTTTCCGAGGCCGCCTGCTGCAACATGCTGAaggaaTCTGGGTGCCGTAATGCGTCCTGTCCTGAGATTCCCACTCCACCGTGTCCGGAAGACTCCTTCATTAGTGAGCCTCACACTGATCCCGGTCAGTGCTGCCCTGTTGTGCCTGCTATGTGCACCTGCAACTTCCAGACCTGCGCTCCAAAACCCACATACTGCCCCAACCGTGGACTTCCCAAACTTGTCGTAAAGGGCAACGGACACCCAGGGACCTGCTACGACCTTTACGAGTGTGTGAAAGAAGGAGATTAATTAGCATCTgcaatataacacacacatttatcttatTGTCCTTGTAAGGaataaccttaacctcagtaacccaaaggaaacattttggttCTTTTAGTTAGTCAGTTAGTTAttcagt
>XM_026928128.2
ACTCCGAACATCAGCTCATGCCTAGTCccatctgttttctgtttagataagtaagaaagagagagcttgAGACAAGAAACAGattgaagaagagaaagaaggataagagagggagggaaagagagagagagagagaaaatgtgacagtgagaaagaaaaactgtATCTGTTAAAGGGTGGAATGTGTTTTGCACTTTGTGGATCTTGGCTCGGATGCTGGCGTTTGTGTGCCTCCTGATGCCAGGCTCTGGGTTCCTGCTGCTGCGTGAAGGGGAAAAATGTGGAGGCTTCATCGAGGGCATGTGTGAGTCCGacttcctctgtctgtctgatgaACCCAAGGACGAGAACATCTATGTAGAAGGAGTGTGCACCAGGGTTCCAGCTTGTAACTGCTCCGAGTTCCAGTGTCCGCCACGGCGCCGCGGTGACCGTCGCAGCGGTGTAGCGACCGATCCGTGTGGGTGTTGCGTCCACTGCGCCAAGCAGAAGGGGCAGGTGTGCGGTGGCCCGAGTTGGAGATGGGGTTACTGCGATCAAGGATTGATTTGCTCCCTTGTAGTGGGAATGGATTCTGCCAGAGCTCCACAGATAGGCGTGTGCAAAGagGTACCAGATCACCTCATTGAAAATTTCACAGCTATCCTGTGTCCAATTCGTACAGGTTGCAACATTCATGTTGGAAATTGTGACTGTTATTCGGAACAGTCCTGTCATTCGTTGTTCCGTTACAGCACCTTTGAGCAATGCCGGCAAGATCAAATAGATGAAGAAATACACTACATCACCGGAGAGCTTCCCAAAAGAGACAGAcctgcatatgtgtgtatggagtgGGGTTGTGAGGTTCAGggctgccagtgtgtgtgtcaggagagAAAGTGCGACTACAGGACAACCCCACTTTCCGAGGCCGCCTGCTGCAACATGCTGAaggaaTCTGGGTGCCGTAATGCGTCCTGTCCTGAGATTCCCACTCCACCGTGTCCGGAAGACTCCTTCATTAGTGAGCCTCACACTGATCCCGGTCAGTGCTGCCCTGTTGTGCCTGCTATGTGCACCTGCAACTTCCAGACCTGCGCTCCAAAACCCACATACTGCCCCAACCGTGGACTTCCCAAACTTGTCGTAAAGGGCAACGGACACCCAGGGACCTGCTACGACCTTTACGAGTGTGTGAAAGAAGGAGATTAATTAGCATCTgcaatataacacacacatttatcttatTGTCCTTGTAAGGaataaccttaacctcagtaacccaaaggaaacattttggttCTTTTAGTTAGTCAGTTAGTTAttcagt
>XM_034306258.1
ACTCCGAACATCAGCTCATGCCTAGTCccatctgttttctgtttagataagtaagaaagagagagcttgAGACAAGAAACAGattgaagaagagaaagaaggataagagagggagggaaagagagagagagagagaaaatgtgacagtgagaaagaaaaactgtATCTGTTAAAGGGTGGAATGTGTTTTGcacTACCACATTACCTCATAAATATCTTTGCCAGTCCTCCATGTGCAATTCACACAGGGTGCAACATTTGTCTTGGAAATTGTGACTGTTTATCAGTAAGGAGTTTTGACCCAGTATTTGACTATAGCACTTCTGGGGAATGCCAACAAGAGCAAataggtctcacacacacacacacacacacacacacacacacacacacacgttagtgTAGTTGAAATTGAATGACCCGATGGAGTGtgagcagtgagacagaaataattttaaactcATGAAAACACGCAGCACGATTAAACACTTGACCACGCTGACCAGATCTTGGCACTAAACCCCATACAAGCAGAAAATTCCAATTTTTACTCTTTCCAAAATAAGTGTGCCAAAATGCCGTTCAGGAAACAATCActtcctcaccagtctctcttttgtctctctcttaaagttaagaAGACAAAGAAGTTACTCATTACTGCGAAAACCACAAAACTTAAACTCCTGTTGATGTTCCTGTGGTAGAAAACTTGATGACttttacagagcactgacactggagactccttccataaacgttaaataaacgttcGCTCATAggaaacttcaccgtatcaataAAACCTTCCTGTACATAAAGAAGAAGAGTTTAGGAAAACACCAGTAGCTTGTATCAGGTTTAGAAAAACACCAGTAGCTTGACCTTAACACagaacatcacatcacacctaGTCCCATCTGTTCTCTGTTTGGAtaaacatgagagagagagagatagagagagagagagagagagggaagggggGCAATATATTTTAAGAGTTGCAGTGTGGTTTGGTCGGAGAGCGTTGTCATTCAGGTCTGTTAGTCATTTTTAGCTCGGTTAGACTCAGACGCAGTGTAAATTGCCCCGTAAGCTCTGTTTTGGTGACCGTGGCAGCACTATGGTTTCCAGCACTTTGTGGATCTTGGCTCGGATGCTGGCGTTTGTGTGCCTCCTGATGCCAGGCTCTGGGTTCCTGCTGCTGCGTGAAGGGGAAAAATGTGGAGGCTTCATCGAGGGCATGTGTGAGTCCGacttcctctgtctgtctgatgaACCCAAGGACGAGAACATCTATGTAGAAGGAGTGTGCACCAGGGTTCCAGCTTGTAACTGCTCCGAGTTCCAGTGTCCGCCACGGCGCCGCGGTGACCGTCGCAGCGGTGTAGCGACCGATCCGTGTGGGTGTTGCGTCCACTGCGCCAAGCAGAAGGGGCAGGTGTGCGGTGGCCCGAGTTGGAGATGGGGTTACTGCGATCAAGGATTGATTTGCTCCCTTGTAGTGGGAATGGATTCTGCCAGAGCTCCACAGATAGGCGTGTGCAAAGagGTACCAGATCACCTCATTGAAAATTTCACAGCTATCCTGTGTCCAATTCGTACAGGTTGCAACATTCATGTTGGAAATTGTGACTGTTATTCGGAACAGTCCTGTCATTCGTTGTTCCGTTACAGCACCTTTGAGCAATGCCGGCAAGATCAAATAGATGAAGAAATACACTACATCACCGGAGAGCTTCCCAAAAGAGACAGAcctgcatatgtgtgtatggagtgGGGTTGTGAGGTTCAGggctgccagtgtgtgtgtcaggagagAAAGTGCGACTACAGGACAACCCCACTTTCCGAGGCCGCCTGCTGCAACATGCTGAaggaaTCTGGGTGCCGTAATGCGTCCTGTCCTGAGATTCCCACTCCACCGTGTCCGGAAGACTCCTTCATTAGTGAGCCTCACACTGATCCCGGTCAGTGCTGCCCTGTTGTGCCTGCTATGTGCACCTGCAACTTCCAGACCTGCGCTCCAAAACCCACATACTGCCCCAACCGTGGACTTCCCAAACTTGTCGTAAAGGGCAACGGACACCCAGGGACCTGCTACGACCTTTACGAGTGTGTGAAAGAAGGAGATTAATTAGCATCTgcaatataacacacacatttatcttatTGTCCTTGTAAGGaataaccttaacctcagtaacccaaaggaaacattttggttCTTTTAGTTAGTCAGTTAGTTAttcagt

Function

symbol description
edem3 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process and mannose trimming involved in glycoprotein ERAD pathway. Predicted to be located in membrane. Orthologous to human EDEM3 (ER degradation enhancing alpha-mannosidase like protein 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148427 False 454 lncRNA 0.45 2 2875322 2912384
TU148429 False 1379 lncRNA 0.43 2 2848899 2877146
TU148431 False 1371 lncRNA 0.43 2 2845709 2877146
XM_026928127.2 True 2297 mRNA 0.47 5 2911950 2918231
XM_026928128.2 False 1312 mRNA 0.50 6 2911721 2918231
XM_034306258.1 False 2258 mRNA 0.46 6 2911721 2918231

Neighbor

gene id symbol gene type direction distance location
ptgesl ptges2,LOC103370734,LOC104955211 coding upstream 141646 2694963 ~ 2704063 (+)
LOC117597819 NA coding upstream 203103 2640711 ~ 2642606 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding upstream 426754 2409325 ~ 2418955 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding upstream 456764 2369339 ~ 2388945 (+)
ccdc181 ccdc181 coding upstream 479464 2360954 ~ 2366245 (+)
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding downstream 2635 2920866 ~ 2926332 (+)
notch2 LOC108265554 coding downstream 33190 2951421 ~ 3031725 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding downstream 117998 3036229 ~ 3055064 (+)
foxe3 LOC108265253 coding downstream 158889 3077120 ~ 3087181 (+)
foxd2 foxd1,LOC108265081,LOC103022344 coding downstream 171350 3089581 ~ 3098224 (+)
G125484 rgl1,LOC107717560 non-coding upstream 100146 2705841 ~ 2745563 (+)
G125525 NA non-coding upstream 103425 2741998 ~ 2742284 (+)
G125509 LOC108265600 non-coding upstream 123827 2719032 ~ 2721882 (+)
G125482 NA non-coding upstream 136050 2707964 ~ 2709659 (+)
G125483 NA non-coding upstream 169718 2672943 ~ 2675991 (+)
G125626 NA non-coding downstream 75619 2993850 ~ 3227664 (+)
G126401 NA non-coding downstream 650758 3568989 ~ 3575303 (+)
G126408 NA non-coding downstream 711571 3629802 ~ 3631632 (+)
LOC117597831 NA non-coding downstream 801111 3719342 ~ 3735098 (+)
G126461 NA non-coding downstream 884313 3802544 ~ 3843737 (+)
alkal1 LOC108265007 other upstream 613569 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 858137 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 1038919 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1499124 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1643783 1155413 ~ 1201926 (+)
znf692 znf692 other downstream 418149 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 526784 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 766662 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 832273 3750504 ~ 3777490 (+)
si:ch73-233m11.2 LOC108265197 other downstream 1177038 4095269 ~ 4104819 (+)

Expression


Co-expression Network