G125626


Basic Information

Item Value
gene id G125626
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2993850 ~ 3227664 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU148482
GTAAAACAACAGATTTTTGCTTTGAAACGTACTTTAGATCATagacagtactgtgcaaaagtcttaggcaccttatttatttattttttttagtacgaactttgttatagatgtttattttctgacttctacattatagattcagtacaaaaacattttagattccaaacattagttttccagcacaaagtgaaatgttacagaaaaatgtttgtatgtcagtaaagaaagcagcagattccataagagacacttttcagat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148482 True 262 lncRNA 0.29 2 2993850 3227664

Neighbor

gene id symbol gene type direction distance location
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding upstream 67518 2920866 ~ 2926332 (+)
LOC113535040 NA coding upstream 83490 2906725 ~ 2910360 (+)
npl npl coding upstream 87304 2897299 ~ 2906546 (+)
ptgesl ptges2,LOC103370734,LOC104955211 coding upstream 289787 2694963 ~ 2704063 (+)
LOC117597819 NA coding upstream 351244 2640711 ~ 2642606 (+)
fcho1 fcho1,LOC108264992,LOC107751067,LOC103395380,LOC100695123 coding downstream 122148 3349812 ~ 3399427 (+)
LOC113534995 LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994 coding downstream 407036 3634700 ~ 3658044 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding downstream 432186 3659850 ~ 3671689 (+)
haus5 haus5 coding downstream 550633 3778297 ~ 3791621 (+)
dohh dohh,LOC106584359,LOC107745802 coding downstream 574992 3802656 ~ 3807484 (+)
G125593 NA non-coding upstream 138075 2854757 ~ 2855775 (+)
G125484 rgl1,LOC107717560 non-coding upstream 248287 2705841 ~ 2745563 (+)
G125525 NA non-coding upstream 251566 2741998 ~ 2742284 (+)
G125509 LOC108265600 non-coding upstream 271968 2719032 ~ 2721882 (+)
G125482 NA non-coding upstream 284191 2707964 ~ 2709659 (+)
G126401 NA non-coding downstream 341325 3568989 ~ 3575303 (+)
G126408 NA non-coding downstream 402138 3629802 ~ 3631632 (+)
LOC117597831 NA non-coding downstream 491678 3719342 ~ 3735098 (+)
G126461 NA non-coding downstream 574880 3802544 ~ 3843737 (+)
LOC117597875 NA non-coding downstream 581592 3809256 ~ 3816185 (+)
LOC113535041 edem3 other upstream 75619 2845709 ~ 2918231 (+)
alkal1 LOC108265007 other upstream 761710 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 1006278 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 1187060 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1647265 1344336 ~ 1346585 (+)
znf692 znf692 other downstream 108716 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 217351 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 457229 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 522840 3750504 ~ 3777490 (+)
si:ch73-233m11.2 LOC108265197 other downstream 867605 4095269 ~ 4104819 (+)

Expression


Co-expression Network