acsbg2 (acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249)


Basic Information

Item Value
gene id acsbg2
gene name acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3445015 ~ 3537289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU148607
gtgttaaaggttaaaggttctatgtacaACAGTTTTCCTGTCAAAACGGGACACTTTTACGCTAAGAACCCAGACAATCTAAAATTGATCATCTTTGTTTAAATCTTCAtgatgattttttcccccctgatttcttcctgtttgaagaTGTTGATGAGGttctaataaatgtaaaagtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagctgctgACTGCCACACTGAATTTCTCACCTTGGCCTTGTTTCTGTTGCGGCTCAAAGTCTGAGTCAGAGCTGGACTCCGAACTGGAGCTGGAGTTCGACGGACTGGAGGGAGCCGAC
>TU148609
gtgttaaaggttaaaggttctatgtacaACAGTTTTCCTGTCAAAACGGGACACTTTTACGCTAAGAACCCAGACAATCTAAAATTGATCATCTTTGTTTAAATCTTCAtgatgattttttcccccctgatttcttcctgtttgaagaTGTTGATGAGGttctaataaatgtaaaagtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtatgtgtgtgtgtgt
>TU148610
aaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcattgaGAGCAGCGTAGAGAATGAAAATCAGTCTGGTTCTCTGACTCTCTGAATTCATGCCAGTGAAAACAGCAGGGATTTTCAGGTCAGATGATGTTTTTGCACTATTTATTGCCTCTCTCgtgtgctgctctggtttcacGGATCTTTCACCAGCAGCAGATTTAAAGCCAAGAAATCACACCATTTAAGCCATGAatattttgttgctttttttttcctttcagccATGCTCCAATGTTCAAATGTTCATATGCAGGGTCTGATTTGTggtgttgttattattactattataatatTGCCTAACAAATTGTCGTGAACttgttaaatattgtaaataccTTCATGCTTGATTTGTCTCGTGCGTGTGTTTATCACATGAGCAACTGAACAGCTGCTCTCACTTCATTTTAATATCGACTTCAAGAAATGAAACTCGGACATGACGCAAATATGAAGAATCTGCTTTTGATAATTTGGCATGTGATATACAGCAGTGTGGaggaaataaatctgtacagtTCTAAGAG
>TU148612
ACTCTGGGAGTCGGGTGTAATGCCCACTCTGGCCGCTAGGcggtgctgctgtgtttacattATTCCCAGCCtggttttttggttttggcGCCACATGCGTTTATTTCTGCTTTTCGAAACTGTCATTTGTGCTTTAACCCGAGAGAATCACCTTCCTCATTCTTTAACCTTCCGCAAAAAGCGCAGTAAATCCACTCTTTCACATCACATATTGCTGCAGACGCTTCTGGTTTAACACGTGTTGGAGCTTAAGCAAACggTGACCGTGTGTGAACCCTCAGCCATATCGACAGCAGGAGTGATGGACCCCGCAGGAGACGTGAGCGTGCTGCAGTCCTGCGCTACTGAAGACAGCATCGCTTCTCTGGAGGACCATACTGCAGAGTCTACAGCCAATGAATCATCAGAGGAGGAGTCTCCCTGTGAGCGGGAAGAGAGCAGTggcatcaacacacacacagagcctggtgagatatctctcactcactctatctcactcacacacacacacacacacaca
>XM_034306598.1
AATGAATGATGTGTTAGGGCGGTTTGTGAGGCAGGCGGAAGAGAAGATACCGGCATTCTGCTGATCGAAGGAacgaagaaaagaagaagaaatcagatttaaaaaagaaaaaaaaagaacatagaAAAGAAATTTAGAAAAATCTCAACAGATCAAGCAGCCAAGGCTTGGACGATGCAGTTGACCGTGTGTGAACCCTCAGCCATATCGACAGCAGGAGTGATGGACCCCGCAGGAGACGTGAGCGTGCTGCAGTCCTGCGCTACTGAAGACAGCATCGCTTCTCTGGAGGACCATACTGCAGAGTCTACAGCCAATGAATCATCAGAGGAGGAGTCTCCCTGTGAGCGGGAAGAGAGCAGTggcatcaacacacacacagagcctgCTCCCGTAGCCCCGTGGTTCGCGCGTGTTCGCGCCCCGGGCTCAAGTCTGTGGACATGGCAGCGGGACGGCGAGGTGAAGCTGAGGATGGGCGAGTCGGGGCCGGCGGCTGAACCTCCTCTCACCGTGAACCAGCTGTTCACACGCACCGTGGAGCGATTCGGCGACCGGATGGCACTCGGCTGGAAAGAAGGAGAGCAGTGGAAGAAGATCAGCTACAGAGATTATTACAGAGACTGCCGCGTCGCCGCCAAGAGCTTCCTCAAGcTCGGCCTGCAGCGCTACCATGGAGTCGGCATCCTGGGCTTCAACTCTCCTGAGTGGTTCATCTCTGACGTTGGAGCCATCTTGGcaggAGGTTTCGCTGTGGGCATCTACACCACCAACTCCCCGGACGCGTGTCAGTACGTCGCTGAGAACTGCCAGGCCAACATCCTCGTGGTGGAGAACCACAAACAGCTGCAGAAGATCCTGCAGATCCAAGACAAGCTGCCTCACCTGAAAGCTATTATCCAGTACAAAGATGCTCTGAAAGAGAAGAAACCAAATCTTTACTCGTGGGAGGAGTTTATGGAACTGGGCCGTAACGAGCCGGACGCGCCACTTGATGACATCATCGCGACCCAGAAACCCAATCAGTGCTGCACACTGATCTACACATCAGGAACAACCGGGCAGCCAAAGGGGGTCATGCTGAGCCATGATAATTTGACGTGGACGGCGTTTGCGACGGCTCATACGATCCACCTGTCAGAAGAGACTCAGGAAGTGGTGGTGAGCTACCTGCCCCTCAGCCACATCGCCGCCCAGATGGTCGACATCTGGATCACTATGAGGGTCGGAGGAGCCACGTACTTCGCCCAGCCTGACGCcctcaagGGCTCGTTGGTGAACACCCTGCGTGAAGCGCGTCCCACGGCGTTCCTGGGAGTCCCCCGGGTCTGGGAGAAGATGCAGGAGAAGATGAAGGCAGTCGGAGCCAAATCGTCCACCGTGCGCCGGAAAGTGGCTTCCTGGGCCAAGGAAGTGGGTCTGCAAACCAACCTGAGCAAGATGGAGcaGAACGGCGCGATGACCCGCACGCCGCTGAACTATCGCCTGGCCAAGCGTTTAGTGTTCAGGAAAGTGAGGAAGGCGCTGGGGTTAGACCGCTGCGTGCGCTGCTACACAGGCGCCGCGCCCATCACCAAGGACACGCTGGAGTTCTTCTTCAGCCTGGACATCCCACTGTACGAGCTGTACGGCATGAGCGAGAGCACCGGACCACACAGCATGTCCCTGCCTGAGGCCCTCAGACtcaccagCTGCGGGAAGGTGATTGCAGGTTGCCAGACGAAGATCTTTAACCCCGACTCGGATGAAAACGGCGAGATCTGCTTCTGGGGCCGTCACGTCTTCATGGGCTACCTGAACATGGCCGACAAGACCGAGGAGGCGCTGGACGCAGACGGCTGGCTGCACTCCGGAGACCTGGGCAAACACGACAAGGACAACTTTCTCTACATTACAGGACGCATCAAAgagctgATCATCACTGCCGGAGGAGAGAACATTCCCCCGGTGCCCATCGAGGACGCGGTGAAGGAGGCCGTGCCCATCATCAGCAACGCCATGCTGATCGGAGACAAGCGCAAGTTCCTCTCCATGCTGCTCACCATCAAGtgccaGTTAAACGGTGACACAGGTGCCCCAGAGGATGAACTCACCCCCGAGGCTGTGGACTGGTGCAGGAAGTTGGGCAGCTCGTCCACGCGGGTGTCGGAGATCTGCGGGGGACGCGACCGCCTCGTCCACGCCGCCATCCAGGACGGCATTAACAGAGTGAACGAGAACGCCACGTCCAACGCCCAGCGTATCCAGAAGTTTATCGTGCTCGATCAGGACTTCTCCATCCCTGGAGGAGAGCtcggtCCCACTATGAAGCTGAAGAGGCCGGTGGTGCTGAAGATGTACAAAGAGCAAATTGAGAACTTCTACAAAGAGGCCGTGACTCCGAGCAACCCTGAGAACCCGCTGCCTCCTAAATAAACTCCATACCAAAGggcaaagacacacacacacacacacacacacacatacccgcgccttctgtctgtgtctgtgtcgcTTCTCATgtaaatgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatggagtgtaaCTTTCCCCATCTGATGTTTTCCAGCTGATTCTCTCCTCcctttgtgatttgtttttttccattatgctttttttttttttttttaaacatgtgcaAGCGAGATGCTAAAGAAACACGAGCGACCTCCTGACGAGCCGCTGCCGAGCAGCTTCATGAAGTTCTTATCAAGCGTAGTGtcggttatttatttatttccgaGGTGTGATGAAGTTTGTAGGAGAGCCGTAGACTTAGTGCCGATTCATCGGGAACGTTCGGGAATCCGAGCTGCTCATGTTTACACGATGGATCTATTtataaattgcttatttatggTTTCTGTTTATGCCAAAGCAGGaaaatagaaggaaaaaaaagaacgtGTGTAGCTGTAGCCGTGTGTAACTGGAGTGTTTTTCAGTCTCGTCCTGCTCTCATTGCTCCGGAGTGTGGAATAATCAAACCTTCTAGATTAGCACCAGTTCTGTACACacgtctgtctctgtctctctagatggatggatggatacttTGATGGACAGAGTCACCATCTTTCTCTGAGAACATTCCACAGGGTTCTTGCTGACATCTGGAAAAACTGGGAATGTGTTAAATGTAAAGAGACTCAATTCCAGATGTACAGAATTTCAGGAGAAAACATACCTGAGACGCTGAGGTTCTCCAGACATTTCCTCCTTCGATCTGGCACCCTAAAGGGTTTATCAGTTTGCACTGGGGGAAACCTGTGACATTTCTATAGAATCCTACACCACAGAACTTCCAAAAGGTTCCAAGTGCCCCATTTGGGATGCTAGAACCGTGACCAATCCAAAGAACCCTGGAGGAACCTTTGGTGTAGGATTCTCTAGAAGTTGTATGGATTCTACTTGGAAAATATCTGAAAGCGAAAACCTTTGGAAACTTTCagaaaggttccaagtagaacctcaTTACAAAGCTGGAACCATTGAATATATAAAGAACCCTCTAGGAACCTGTCTGAAAGGGGGGGGGGGTGTAGGGTTTTATAGAAATTGTATGGGATCTATTTGGAAAATTCCTCTTTGGGAAGCTAGAACTGTTACcaatccaaagaacccttgaggaacctttgGTGTAGGATTCTACAGAAGTTGTATGGATTCAACTGGGAAAATTTACGAAAGGGAAAACTGTTGGAAACTTTCAGATGTTAAAAGTAGAATCCAATTAGGAAGCTAGAACCATTAGCCATACAAATAAACCTCAAAGACCCTTTCTGAAATGGAAACGTTAGGTGTAGTGCTTTATGGAAGTTGTATGGGTTCTACCTGGAAACTTTCTGAAAAGGAAAACCTTTGGAAATTTTCAGAAAGGTCCCAAGTAGAAACCTAGTTACCCTTGAAAAATCATTCTGAAAGGGAAAAACCTTTGCTGTAGTGTTCTATAAAAATTGGAttggttctacttggaaactTTTAGGAATGTTTCAAGTAGAACCGAACTACAAATCTGGAACCACCGACTATAAAAACCCTCAAGGAAATTTTCAGAAAGGGAAAATCTTTGGAAACTTTCAGAAAGGTTCCAAGTAGGACCCAGTTAGGAAGCTGGAACCATTAGCAATCCAAAGAACCATTGAGGAACCTTTCTGAGAGGGAAAACCTGTCGTGTAGGGTTCTATAGGAGTTCCATGGGTCCTACTTGGAATCTTTCTGAAAGAAAAGCCTTTGGAAAATTTCCAGAAatgttccaagtagaacccctgtagaaagacagaaacattaactatccaaagaacccttgaggaactctTTTTTAAAGCGCAGTCTCTTAAAGCTTGTcatgaaatgaaaagtaaaaaaaaatataaaatgtgattttttttttttttttattctagaaAAATTGAATGTTTTCTCTGAATTAAAGAGACgtgttaaaggttaaaggttctatgtacaACAGTTTTCCTGTCAAAACGGGACACTTTTACGCTAAGAACCCAGACAATCTAAAATTGATCATCTTTGTTTAAATCTTCAtgatgattttttcccccctgatttcttcctgtttgaagaTGTTGATGAGGttctaataaatgtaaaatgtgtgtgtgtgtgtgtgtgtgtgtggcattgaGAGCAGCGTAGAGAATGAAAATCAGTCTGGTTCTCTGACTCTCTGAATTCATGCCAGTGAAAACAGCAGGGATTTTCAGGTCAGATGATGTTTTTGCACTATTTATTGCCTCTCTCgtgtgctgctctggtttcacGGATCTTTCACCAGCAGCAGATTTAAAGCCAAGAAATCACACCATTTAAGCCATGAatattttgttgctttttttttcctttcagccATGCTCCAATGTTCAAATGTTCATATGCAGGGTCTGATTTGTggtgttgttattattactattataatatTGCCTAACAAATTGTCGTGAACttgttaaatattgtaaataccTTCATGCTTGATTTGTCTCGTGCGTGTGTTTATCACATGAGCAACTGAACAGCTGCTCTCACTTCATTTTAATATCGACTTCAAGAAATGAAACTCGGACATGACGCAAATATGAAGAATCTGCTTTTGATAATTTGGCATGTGATATACAGCAGTGTGGaggaaataaatctgtacagtTCTAAGAGATTAAAATCCGACATACTGAA

Function

symbol description
acsbg2 Predicted to enable long-chain fatty acid-CoA ligase activity. Predicted to be involved in long-chain fatty acid biosynthetic process. Predicted to be active in cytoplasm. Is expressed in several structures, including nervous system; neural tube; optic vesicle; trigeminal placode; and ventral mesoderm. Orthologous to human ACSBG2 (acyl-CoA synthetase bubblegum family member 2).

NR:

description
long-chain-fatty-acid--CoA ligase ACSBG2-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15013 ACSBG; long-chain-fatty-acid--CoA ligase ACSBG

RNA

RNA id representative length rna type GC content exon number start site end site
TU148607 False 345 lncRNA 0.43 2 3476321 3491140
TU148609 False 224 lncRNA 0.36 3 3476321 3537289
TU148610 False 572 lncRNA 0.38 2 3455317 3477053
TU148612 False 520 lncRNA 0.51 4 3445015 3458860
XM_034306598.1 True 5199 mRNA 0.48 16 3452558 3477074

Neighbor

gene id symbol gene type direction distance location
fcho1 fcho1,LOC108264992,LOC107751067,LOC103395380,LOC100695123 coding upstream 45588 3349812 ~ 3399427 (+)
foxd2 foxd1,LOC108265081,LOC103022344 coding upstream 346791 3089581 ~ 3098224 (+)
foxe3 LOC108265253 coding upstream 357834 3077120 ~ 3087181 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding upstream 389951 3036229 ~ 3055064 (+)
notch2 LOC108265554 coding upstream 413290 2951421 ~ 3031725 (+)
LOC113534995 LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994 coding downstream 97411 3634700 ~ 3658044 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding downstream 122561 3659850 ~ 3671689 (+)
haus5 haus5 coding downstream 241008 3778297 ~ 3791621 (+)
dohh dohh,LOC106584359,LOC107745802 coding downstream 265367 3802656 ~ 3807484 (+)
smim24 NA coding downstream 281115 3818404 ~ 3821091 (+)
G125626 NA non-coding upstream 217351 2993850 ~ 3227664 (+)
G125593 NA non-coding upstream 589240 2854757 ~ 2855775 (+)
G125525 NA non-coding upstream 702731 2741998 ~ 2742284 (+)
G125509 LOC108265600 non-coding upstream 723133 2719032 ~ 2721882 (+)
G125482 NA non-coding upstream 735356 2707964 ~ 2709659 (+)
G126401 NA non-coding downstream 31700 3568989 ~ 3575303 (+)
G126408 NA non-coding downstream 92513 3629802 ~ 3631632 (+)
LOC117597831 NA non-coding downstream 182053 3719342 ~ 3735098 (+)
G126461 NA non-coding downstream 265255 3802544 ~ 3843737 (+)
LOC117597875 NA non-coding downstream 271967 3809256 ~ 3816185 (+)
znf692 znf692 other upstream 97268 3336380 ~ 3347747 (+)
LOC113535041 edem3 other upstream 526784 2845709 ~ 2918231 (+)
alkal1 LOC108265007 other upstream 1212875 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 1457443 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 1638225 1803475 ~ 1806790 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 147604 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 213215 3750504 ~ 3777490 (+)
si:ch73-233m11.2 LOC108265197 other downstream 557980 4095269 ~ 4104819 (+)
ssuh2rs1 LOC108264961 other downstream 683361 4220650 ~ 4278077 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 1088796 4626085 ~ 4727880 (+)

Expression


Co-expression Network