G126401


Basic Information

Item Value
gene id G126401
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3568989 ~ 3575303 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU149403
acgttttttttccacaaataatTTGACAGATAACATAGATTTCTGTTAAATATCTTAGCTCTCATGTTACTTCTTACCTCAAGCAAGTTTCTAatacaaatttttaataaagtacTAATCTTgagataatgaaagaaaaaggcAGAAATAGCACCATTACAAAGCACCACAAAACTGACAACTTAAATCTCTCTACGCTGTGTGTAAAGCCGATGAGGAGGAAGCAGCCTGTCACAGCTCGGATTGTTTCTCAGATTTAAAGCACTCATGAAAGGATATACATCACTTTATTAAGCCgagtaaaaatattattgtattttctgGACAATATTTCACTCTAGAGTATAAGACACACCATCTAAACTGTGTCTGATTAGAAATAAGTCAATATACACCTCGCTTTTTGCTGTAGCAGGTATTTGTATTTCGCCTAATGTTTCTACTTTCTCAAGGATTCCTACGGACATAGTGTAGTTTTTTTGTTACCATAGTTCAGTGCCATGATCAAAATAAAGCCTGaccttaaaggtgcagtctgtaattttaaaaaaaggtttctaaACCATAAATCTTCTCACACATTCAAAGATTCTTTGGGAAATACCGCAATTCAAAGTTTGCCATGCAATGGATCTCTCTAGTTTCTTCGcttcaggcttctgtttacatttttacagccTGTTAATGAGCCCCGCCCCTTACTGGAACAGAGCTGCTCAGCTCCACCCCTTTCCCCTAAAAGGCAACCCATGAGGCATATCTATTTTCAGCTTGATTTGAGGGAAAACAGAGAGCCCTAAAATTATATACCGCACCTTTAATCTCTCAGTCAGGATTagaaatatgtgtgtaaatataatcCTAATGAAGAAGTCATTATAATCGCAATATGTAATGCTGATTTACCACATAAAAGTAGCTTCTGGCATGATAATGCTAATGCTGATGCTAGTGCTAATGTTAATTTCCTCTTTCGCAGCTTTGGATTTGTCATGTCTTTGGAAGTGTTATGTTAGCACCAAACTAACTGtgctaacATATATGTCACTATAAACCAGAAAATACAATTAATAacaatttctttcatttataaaGCACCTTCATAACACTCAAGGTTGCTTAGCTCTTCTAATGCTAATTTTGACTAACTCTCTCCAGTGCTTAGTgtattaaagcaaaaagaaacGATTTTAGTTTTCTccttaccccaaatgtagtcgATGCTAATCTGGTGGATATAGGCTTCCTgtacttgttagcaacattagcctcgGAGCTCCAGTGCAAAAGCAAAGAAGCAAACTTTGGATACAAAAATCAGTCTGGGCTGATCAAGTGCCACTGCAGTGATagaaaaattatgtaaataatatgtcaTTTCTGGCCAGATTATCGCTTTAAAGCCTTAAACCTGATGGTTAGGCTACGGGAAAAGGTGCTAAACACAATGTatccaaaaatacatttccGGGTGTCTTTAAGACATTAATGTTGTTTAGAAAGACTGGCCATGAGCCACAACTCCAGGTAAATAATTTAGAGTTGAACTGTTTGTAATGCTGAGCGTCTGTCTCACGTGAAATGAGTTTTGTTGTTTGATAAACAGACTACGCTAGAAGCGAGGCTTTTCTACCTTCATGCGACCAAACAAGGCAAGCTCAGACGACATGTCTCAATGATTCACCTCTGCATTAGACGTTTCGTTTTACTCACGTAGTCCTAGCTATCAAAAAATGCTTcgttatttataaatataaatttgttatAGGGACATTTTTTCCACACTGAATGCGATGAACTTATTCATTACTAATCacattagcatttatttttgctgattAAGAAcactaaactgtttttttctctttaaactgACAGCTGTCcttttttggtaaaaaaaacTACAGGTAGTGTTCATAGCACTATATGACATAAACCCTTTAAAACAACTGACATATACCTATTAAACATATCCAAACACTTACATCAATAACTGTCAGCTgacaaataatactttttaaaaaaattacaactaCATAAACCCTTTATAACAACTGACATAAAACtacatgaacatttataaatgctaCTCCAATAAGCATCAGCTGACGACTAAATCGActtcctttaattttttatgttaaggTGACATAACAACTACATAAGCCGTTTATGACAATTCATAttaacctacataaacatttaaaaatgcttcCTCCAATAAGTGTCATTTGACATAAACACTACTTTCTGTCATTTTAATGTGTTACTCTTTATGACACccgacataaacctacataaatgCCCGCTCCAATAGGTGGATATAATCAAAGGTTACACTTTGGCATTAGGATGTAATAACCTTGACATAAAAACCTGCTGTATAAAACAGGGACAACCATTACACTGTTATAACGCAGTTATGAATATTGTCGTAAGTAAAGTGAGTTTCTTATTACTGCTTATAAGAAACCAAGGAATTCCTATGACTGTCATGTCACCATAATGACagattatgtatattttatcagGAACTTAAGTAAAGTGATCATGTATACAATGTTTATGAACACTTATGACAATGTAATGTcatcataatgagaaataatatGCATTTTTCAGGCCCTTATGGAAAGTGGGTATAATTTTACTATTTACATTTCTATGAACACTTATGACAATGTCATGACACCCTAATGAGTGATGATGTGTATTTTCTCAGGCCCTTACCTAAACTGGGTTTAGGGTTTCCTATTTTGATAGTTCTATGAAGGCTTATAACAATGGCATGACACCATGATTACAGATTCTgtttcattttattatttatatgattCTTATGAACACTCATGACTATGTTATGACTTAACATTAACCGTAACCTTAATTAAGCTTATTAACCTTAATTAAAGTTTTGCCTATTTCCTCTGAGCCGGTTTGGTATTCATGTTTGACGTCATCACTGCTATGTAGTTCTGACATACCAGAAGTGCTATAATGACTTATAATTTTGTCATAACATTCTAAGGTATGTCAGCCTGGAAAGTGACATAGTACAATCTTAAAGTCAACCAAACTCTCATggctttttaaatgtttatgtaggggTACACTGTGTCATAAATGGCTTATGCGGTTgtgtagccctatgaacactacctttttttttttttttaaagtgcttggTGTGTGAAAATACAGCTGAATGTCACAGTATAAGGTGATGATGACTCATGGCCTCCAGCTATATTTGTGTAGTTATAATAATAGATGTGTTGAGATCATTGTCGGATTAACGCTCCTGTAACCATCCCAGTCCGAAGGGCAAGATCAGGGCAACCAAAATACAGTCACAGAGaggttatacagtatacagtatatatatatatatataaaagcactTTACAGACCAGAACAGCACGGTTTTATGAAGCTTATTATACTGAATGGTTGATACTGAATGGTTGATCAGGCcgtaacaacttttttttttttttttacataaagtgaaaattaatagactaaCTACACCCGATTTAATCTGTATGCCAAATccgatttttaaaaattgcctTTATTCTCATTTTTTCCTCCCAAGTGAAGACGGTATTTGAGATATAATTGATGCAACATGTGACATCTAAATCTTTGAGAATTTCCTGCTCGCCAGAAGGACGCTAACATTCTTTGGATAAGTGTGCAAAGTCGACATGAACAATATGACGTGTTGGAGCcgcgaattttttttttcaactgtcaCCATACGAGAATATAAATATCTGGAAATAACGCTATAATCATTAACATCTGTGTTTAAGCCACTCCACTCTGCCAATGGCTACGCTGTGAAGTTTGATTTGCACTTTTAGACTAATattgtgtcctaaaccacatcagcactTCAGTAAAGAACTGaatttggacattttttaaTGGAAGACAGATTTTAGTTACTTCTCAGCAACACTAGGCCTCATAGCATCAGCGCAAAAAGTCAGGCAGCGAACATTTCTTGGTTGATCGAATACATTTGAGAGAGGAACGTTGTGCAAATATgatttttgggtgaactatatctttaaatattttttttttacttgccaCTTGTATGATGTGATCTCATCACAGACAGCTAAATCTCCTAATAAGAACAAAGAAATATTAGCAAAAACTACACGTCAAAAATAGAAACAGAGATGATGTAAACAGTGAATAATGTGGTCATTAGTGTTTCTTTTGAACACAGCACTGCACAGTTCAGGGGTTTTCCTTACATTACAGCTTTAGcacactgatatttacatcaTGACTCAGATtatgagagaaagaagaaaggaactgaaaaaaaaagaaatgttctgTGCAGAGAGTCTGAGACTGACAATTGGTTTTACAGTATGTCCAGCCTCCTGGACAAAAACAAGTCTGTATTCAGTTCTATGCTGATGAGATACAATTATACTCATCAGTCTAAAAGCCTGGATGAATAGAAACTTCcttctttttacatttcttttataaaatgcaaatgatgcTTGAAATAAGGTTCCTGATTTCACCCTAGAGCTCAATGGCTATTGTGTGAAACCAAGAGCTGTAATTAATTATGGAATAATATTTATGGCAGTTGAAATTGGATTTGTATTCTGTTGATCTGAAATTTTATGCCATCTGGAATGTATTCCCGGGATAAtctccggatccactgcaaaCCCTATCCAGGTGAAAGCGCTTTATGTTTCATATGTAATTCAGCTTCTAATTAAAATTTGATGTACAAATTCAATACGATTGCTATATTATTACATCTGAACACTTCATTTCTGAAGTCAAGGATGCGCTGATTCTCAGTCTGATGCACTGAATTTTGGAATGTGTTGTTCCACTGAAATTTTGAACTTGAATAATTTAcatctgattattttaaaatgaacgtGAATGACATTCCATTCATCTTTATCCGGGTCAGGCTTTTATAATCTCTGGATCGATAAAGTGCTGCTGTCTCTTTAAGTACAGCTTCAGCTAATTCAGGAAAACAAAGTCGGAGCCAGATGTAGGAAGTTCTGTAACTTTGTTACTCTGCTGAAGTACAGTTTGCAAATTTCTGCCCTTTACTTAAGAAAGTTTGGACTCAAAATGACTCTATACATGAAAAATTATTGTCACTAGTTTTATAATAAATGGTATGAGCCTATAAGCAGGGAAAAGCAGTAATCTGTGCAGTCCTGTGCTCAGCTGTAGCTATAACTGAGTATAACCGAAGTATCCCATCTGAAATCTGGATGAAATAAGAACTAGCACCATGTTCAGGACAACTAATAGAAGACAAATCTCTCTCTGACCATCTGACATTCACAGGAACTGCACCAGAGCAGCTGATTTGGGAGAGTGGAGGACAGCAGCacagtctctctccctccttccttccctctctcttgttttctctccctctctctctctctctctctctctctcactggggTGGGACTGGCACTCCGTGCATGGAAAAAAGAGAGCGAGggaacagagagagagagagaaaagagaagagaggaggtcAGTGTCCTTGGCAAGTCTTGCAGCACATCTGTCGGAAATATGGGCGGCTGCAGAACTTGAACCTGAGCACCAGGGGGCAGTACGCCACTGTGTTCACATCTTTACAC

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU149403 True 5669 lncRNA 0.36 7 3568989 3575303

Neighbor

gene id symbol gene type direction distance location
fcho1 fcho1,LOC108264992,LOC107751067,LOC103395380,LOC100695123 coding upstream 169562 3349812 ~ 3399427 (+)
foxd2 foxd1,LOC108265081,LOC103022344 coding upstream 470765 3089581 ~ 3098224 (+)
foxe3 LOC108265253 coding upstream 481808 3077120 ~ 3087181 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding upstream 513925 3036229 ~ 3055064 (+)
notch2 LOC108265554 coding upstream 537264 2951421 ~ 3031725 (+)
LOC113534995 LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994 coding downstream 59397 3634700 ~ 3658044 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding downstream 84547 3659850 ~ 3671689 (+)
haus5 haus5 coding downstream 202994 3778297 ~ 3791621 (+)
dohh dohh,LOC106584359,LOC107745802 coding downstream 227353 3802656 ~ 3807484 (+)
smim24 NA coding downstream 243101 3818404 ~ 3821091 (+)
G125626 NA non-coding upstream 341325 2993850 ~ 3227664 (+)
G125593 NA non-coding upstream 713214 2854757 ~ 2855775 (+)
G125484 rgl1,LOC107717560 non-coding upstream 823426 2705841 ~ 2745563 (+)
G126408 NA non-coding downstream 54499 3629802 ~ 3631632 (+)
LOC117597831 NA non-coding downstream 144039 3719342 ~ 3735098 (+)
G126461 NA non-coding downstream 227241 3802544 ~ 3843737 (+)
LOC117597875 NA non-coding downstream 233953 3809256 ~ 3816185 (+)
G126453 NA non-coding downstream 258375 3833678 ~ 3838635 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 31700 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 221242 3336380 ~ 3347747 (+)
LOC113535041 edem3 other upstream 650758 2845709 ~ 2918231 (+)
alkal1 LOC108265007 other upstream 1336849 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 1581417 1877028 ~ 1987572 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 109590 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 175201 3750504 ~ 3777490 (+)
si:ch73-233m11.2 LOC108265197 other downstream 519966 4095269 ~ 4104819 (+)
ssuh2rs1 LOC108264961 other downstream 645347 4220650 ~ 4278077 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 1050782 4626085 ~ 4727880 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G93321 LOC106613304 non-coding NC_048565.1 CM023219.2 83289672 ~ 83290675 (+)
bowfin (Amia calva) G82353 NA non-coding CM030129.1 CM030129.1 38558466 ~ 38564283 (+)