G126454


Basic Information

Item Value
gene id G126454
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3970379 ~ 3973284 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU149465
CCTGTTTTTTCTCAGGCTGGCAAAGAACTAATAACTTTCACTGCAGGGGGAAGAAAAAGCCGAAGTCTGGGCGTCTGATAGCACAAACACACGCCTTAACGTCTCGCACTAAGCTGAAGGCTTGGCTCAGGACCATGAAGGCGAAAACAAGCCCCGGAGCAACCGGCTTTAGACAGAGAGGAAGCGGAGAGAAAACCGGAACGCGTTACGACACTTCTTCTTGCGGCGATCTCGGTTTGACTTCATTATTAAGGACACGGGACGACTCGGGATCATGTGcaggaaatgaaaggaaaacgGACAAATGAAAGGGATTTGATGGACGTACCATGTTCGGAGTGAGAGCGCCAGCCGGAGCGGGGAAAGTTGTGTCTCGGAGGCTTTTCGCGGCGCTGCGGCGCGCTGTCACTGCGCGCTCATGTCGTCCGGGGCGGGGGGTTTCTCTCCTTTAATTCACCTACTCTATTATTCCTCCAAATCCATTTCTGCTCTGAGTCACAAAGTGTAAAATCCTCAGTCCTCGGACAGTCAGGGGCCAAGCGCAAAGTCGTCTCCGGTGCACAATGAGgaggttgtttttttattagattttttttttttagtttagagTAAAATGGAGCGCGCTCGGACTCTCAGCTGCATCTGGGCCGGGTTTGTAGCTCTCTCAGCCCGCTGTgcttttcactcacacacacgccgaGCTCCTGTCTCATGGCTGCTGGGTGATCAGCACATCACGTCTTCTTCGCTTCTCCTCtccactttattttattatcacgACGCAAACGGCGGCgcaacaacaccaacaccaccaacaccaacaccaccaccaagcACACCAGCAGCAGCCGCGTACAGTCGCGGAGAAGGAATTGATGAAACGCGTCGGagGAAATGAATAACAACGAATTTATAACACCACTGCACTAAACTGCACTATTCTTCAGCAAATAGAAGTCAACTGGATTTTATTTGGTTAAAGAAGGAAAGCAGCATTAGCCTTTACACTCATATTGCCCACTATCTATTTTGACACTTGCACGTGCAGCTCATGTTACAAACCCCCCAGTGATTAAGGGAACATCTGGGTTTGTACCTATAAAGTGCAAAATTAGGGACCCTAATGAGTGGCACTGAATTTGAGTTTTTGCAGAAAAATCTGATATTGGCcactatttatttgtttatttgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149465 True 1193 lncRNA 0.48 2 3970379 3973284

Neighbor

gene id symbol gene type direction distance location
smim24 NA coding upstream 149288 3818404 ~ 3821091 (+)
dohh dohh,LOC106584359,LOC107745802 coding upstream 162895 3802656 ~ 3807484 (+)
haus5 haus5 coding upstream 178758 3778297 ~ 3791621 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding upstream 298690 3659850 ~ 3671689 (+)
LOC113534995 LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994 coding upstream 312335 3634700 ~ 3658044 (+)
abtb1 abtb1,LOC107674366,LOC107696919 coding downstream 145751 4119035 ~ 4131370 (+)
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding downstream 179753 4153037 ~ 4177850 (+)
pcsk1nl LOC108265073 coding downstream 260710 4233994 ~ 4247657 (+)
LOC113535168 LOC108265824,LOC108440552 coding downstream 403350 4376634 ~ 4388950 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding downstream 421064 4394348 ~ 4445422 (+)
G126493 NA non-coding upstream 6283 3907079 ~ 3964096 (+)
G126461 NA non-coding upstream 126642 3802544 ~ 3843737 (+)
G126453 NA non-coding upstream 131744 3833678 ~ 3838635 (+)
LOC117597875 NA non-coding upstream 154194 3809256 ~ 3816185 (+)
LOC117597831 NA non-coding upstream 235281 3719342 ~ 3735098 (+)
G126525 NA non-coding downstream 86995 4060279 ~ 4061066 (+)
G126529 NA non-coding downstream 96407 4069691 ~ 4132669 (+)
G126549 LOC108265196 non-coding downstream 138290 4111574 ~ 4185080 (+)
G126591 NA non-coding downstream 280460 4253744 ~ 4254762 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding downstream 344926 4318210 ~ 4358056 (+)
wdr13 wdr13 other upstream 192889 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 268676 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 433090 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 622632 3336380 ~ 3347747 (+)
LOC113535041 edem3 other upstream 1052148 2845709 ~ 2918231 (+)
si:ch73-233m11.2 LOC108265197 other downstream 121985 4095269 ~ 4104819 (+)
ssuh2rs1 LOC108264961 other downstream 247366 4220650 ~ 4278077 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 652801 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 769955 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1873863 5847147 ~ 5907946 (+)

Expression


Co-expression Network