G126529


Basic Information

Item Value
gene id G126529
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4069691 ~ 4132669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU149551
gtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagaaagaatgagtGTGCTGGAGGTTAATAGTGTGTCCAAGGACAGTTTTGGTCCAGAGTTGATGCAGAATGCGCACTAATTCCTCAATAGCAGTAATATTTTCACACTGGCATGAAATTAgttttgtgtgtataaaaacagaatgcatagaagcaaataaataagtgtTATAAAAAGCAAACCTGTTTGGATTTGTGTTTGGTAATGTC

Function

GO: NA

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling

RNA

RNA id representative length rna type GC content exon number start site end site
TU149551 True 264 lncRNA 0.38 3 4069691 4132669

Neighbor

gene id symbol gene type direction distance location
smim24 NA coding upstream 248600 3818404 ~ 3821091 (+)
dohh dohh,LOC106584359,LOC107745802 coding upstream 262207 3802656 ~ 3807484 (+)
haus5 haus5 coding upstream 278070 3778297 ~ 3791621 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding upstream 398002 3659850 ~ 3671689 (+)
LOC113534995 LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994 coding upstream 411647 3634700 ~ 3658044 (+)
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding downstream 20368 4153037 ~ 4177850 (+)
pcsk1nl LOC108265073 coding downstream 101325 4233994 ~ 4247657 (+)
LOC113535168 LOC108265824,LOC108440552 coding downstream 243965 4376634 ~ 4388950 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding downstream 261679 4394348 ~ 4445422 (+)
tfe3a LOC108265526,LOC108279478,LOC108440537 coding downstream 317907 4450576 ~ 4479625 (+)
G126525 NA non-coding upstream 8625 4060279 ~ 4061066 (+)
G126454 NA non-coding upstream 96407 3970379 ~ 3973284 (+)
G126493 NA non-coding upstream 105595 3907079 ~ 3964096 (+)
G126461 NA non-coding upstream 225954 3802544 ~ 3843737 (+)
G126591 NA non-coding downstream 121075 4253744 ~ 4254762 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding downstream 185541 4318210 ~ 4358056 (+)
LOC113535080 NA non-coding downstream 353602 4486271 ~ 4494004 (+)
G127105 NA non-coding downstream 640125 4772794 ~ 4795256 (+)
G127147 abt1 non-coding downstream 708757 4841426 ~ 4842134 (+)
wdr13 wdr13 other upstream 292201 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 367988 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 532402 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 721944 3336380 ~ 3347747 (+)
LOC113535041 edem3 other upstream 1151460 2845709 ~ 2918231 (+)
ssuh2rs1 LOC108264961 other downstream 87981 4220650 ~ 4278077 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 493416 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 610570 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1714478 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2624094 6756763 ~ 6811646 (+)

Expression


Co-expression Network