G126549 (LOC108265196)


Basic Information

Item Value
gene id G126549
gene name LOC108265196
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4111574 ~ 4185080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU149580
tgtgatgtgtgtgagagagagagggggagagagatagagactaTAGTAAACTGCTGCTCAGTGGCACCATCTCAGGCCCGAGTTCTGTCTTTTTTGGGCTGTGGACAGAGAGAGTAGGAAGTGTGTCCGAGGGGTCCTGGCTGTCTGCAGGGGACCACTGAGGTGCCTGTGTGAGAGGGTTCCTGCTGATAACAAGCTGGAGCTGATCTCCCGCCTCGGCAATCAGAGGCACGGCTAAGCAGCAGTCAAAGTCCCGGGTGCGCACGTGATTCACctgagatggagagacagaggctGTATTCAGACATACAGCTCAAAtatgatcccacacacccccTGATAAGTAGGAAAAAATATCTACAGTCTGAATGCCG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149580 True 374 lncRNA 0.53 2 4111574 4185080

Neighbor

gene id symbol gene type direction distance location
smim24 NA coding upstream 290483 3818404 ~ 3821091 (+)
dohh dohh,LOC106584359,LOC107745802 coding upstream 304090 3802656 ~ 3807484 (+)
haus5 haus5 coding upstream 319953 3778297 ~ 3791621 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding upstream 439885 3659850 ~ 3671689 (+)
LOC113534995 LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994 coding upstream 453530 3634700 ~ 3658044 (+)
pcsk1nl LOC108265073 coding downstream 48914 4233994 ~ 4247657 (+)
LOC113535168 LOC108265824,LOC108440552 coding downstream 191554 4376634 ~ 4388950 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding downstream 209268 4394348 ~ 4445422 (+)
tfe3a LOC108265526,LOC108279478,LOC108440537 coding downstream 265496 4450576 ~ 4479625 (+)
ntpcr ntpcr coding downstream 315705 4500785 ~ 4504839 (+)
G126525 NA non-coding upstream 50508 4060279 ~ 4061066 (+)
G126454 NA non-coding upstream 138290 3970379 ~ 3973284 (+)
G126493 NA non-coding upstream 147478 3907079 ~ 3964096 (+)
G126453 NA non-coding upstream 272939 3833678 ~ 3838635 (+)
LOC117597875 NA non-coding upstream 295389 3809256 ~ 3816185 (+)
G126591 NA non-coding downstream 68664 4253744 ~ 4254762 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding downstream 133130 4318210 ~ 4358056 (+)
LOC113535080 NA non-coding downstream 301191 4486271 ~ 4494004 (+)
G127105 NA non-coding downstream 587714 4772794 ~ 4795256 (+)
G127147 abt1 non-coding downstream 656346 4841426 ~ 4842134 (+)
si:ch73-233m11.2 LOC108265197 other upstream 6755 4095269 ~ 4104819 (+)
wdr13 wdr13 other upstream 334084 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 409871 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 574285 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 763827 3336380 ~ 3347747 (+)
ssuh2rs1 LOC108264961 other downstream 35570 4220650 ~ 4278077 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 441005 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 558159 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1662067 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2571683 6756763 ~ 6811646 (+)

Expression


Co-expression Network