G126591


Basic Information

Item Value
gene id G126591
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4253744 ~ 4254762 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU149636
CAAAGTTTACAAAAGCATAACttacaatgatttatttttttgctataaCACAGATACAGAGTTTGTTCAAAGAGGAACACAAGAAAGATGTtaagaaaacagaataaaagaacAGTGAAATTTACAAAGTTGAACTGTCAGAACTACTTTTTGTCTGAGACAACTCGGCATTATTTATTGCTTGTGAGTTGAAGGAATATATTTTGGTTATGTGCCTGTAAATAGTCCTTCGTTATCAAACAGGAACGTGATTAACAGTGCGATTAACAGCATGCTCAAGGGTTTGGCGCTGAAATTCACACGCCTGGCTCGTGTTAGTGCCGATGTCACTGCAACcttcttcttttattcattattaaactgTTGTTCAGAAGCTGCTTCATTTTTAACTATGAGTATTAGAAGGATTAGAAAACTGGTACTGTGCTGTTTTTACGAGGAATAAATAAAGAGTGGAGAGATTCTGTGAAACGATGAACCAACACTCAAATGATCAGAGTTTTGGCACTAAAGTAGTGCAGGAGAAATGTGTGATCTCACTCACACTTACAATGTAATTACCGCAGGATAATGAGTTTGGCTCTCCTGCAGAGAGGAGGACGTGTATGAGTTTGGAAATGAAGACgagtgttcagtgtgaaaacagtttctcacacacattcagctgTGTCATGTAATGCCAGTTGGTTACTTCCGCATACAtgcaagaaaacacacacacacacacacacacacacacacacaaacacccctcCTTTTTGCCTGCACAGGAATCTTCTCATCTTCAGTGCTGGATTAGTTGATAGGGGGAATCTCCTCCCCGAACTTAGCAAGATGAGCAGCATTCTTGGCTTCATACAGCAcctacagaaagaaagacagagagggacagagagagatggagagagagagaaagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149636 True 918 lncRNA 0.40 2 4253744 4254762

Neighbor

gene id symbol gene type direction distance location
pcsk1nl LOC108265073 coding upstream 6087 4233994 ~ 4247657 (+)
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding upstream 75894 4153037 ~ 4177850 (+)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 122374 4119035 ~ 4131370 (+)
smim24 NA coding upstream 432653 3818404 ~ 3821091 (+)
dohh dohh,LOC106584359,LOC107745802 coding upstream 446260 3802656 ~ 3807484 (+)
LOC113535168 LOC108265824,LOC108440552 coding downstream 121872 4376634 ~ 4388950 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding downstream 139586 4394348 ~ 4445422 (+)
tfe3a LOC108265526,LOC108279478,LOC108440537 coding downstream 195814 4450576 ~ 4479625 (+)
ntpcr ntpcr coding downstream 246023 4500785 ~ 4504839 (+)
cxxc1a cxxc1a,cxxc1,LOC108265945,LOC107727409,LOC107674299,LOC108440538,LOC107743112,LOC107701818 coding downstream 250651 4505413 ~ 4512377 (+)
G126549 LOC108265196 non-coding upstream 68664 4111574 ~ 4185080 (+)
G126529 NA non-coding upstream 121075 4069691 ~ 4132669 (+)
G126525 NA non-coding upstream 192678 4060279 ~ 4061066 (+)
G126454 NA non-coding upstream 280460 3970379 ~ 3973284 (+)
G126493 NA non-coding upstream 289648 3907079 ~ 3964096 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding downstream 63448 4318210 ~ 4358056 (+)
LOC113535080 NA non-coding downstream 231509 4486271 ~ 4494004 (+)
G127105 NA non-coding downstream 518032 4772794 ~ 4795256 (+)
G127147 abt1 non-coding downstream 586664 4841426 ~ 4842134 (+)
G127155 NA non-coding downstream 630258 4885020 ~ 4939386 (+)
si:ch73-233m11.2 LOC108265197 other upstream 148925 4095269 ~ 4104819 (+)
wdr13 wdr13 other upstream 476254 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 552041 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 716455 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 905997 3336380 ~ 3347747 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 371323 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 488477 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1592385 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2502001 6756763 ~ 6811646 (+)
mrps36 LOC108265361 other downstream 3169239 7424001 ~ 7430997 (+)

Expression


Co-expression Network