G126628 (mecp2,LOC107735123,LOC106572920)



Basic Information


Item Value
gene id G126628
gene name mecp2,LOC107735123,LOC106572920
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4318210 ~ 4358056 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU149676
GGAATTCATATATACGTATTTactaaaacacatgaaataaaGATTCAATAATACAGACTGATATTATTAACTAAttgaagtaattaaaaaaagataaagacatTCTGTGTCCCTCTTGCTCTGTTATGGAGCAACTGTAttaactgtattaaaaaaaaaaaagcaagagggacacaaaacatttctttcttttttaaatggcaCAAATGTGTGGTGGACAtccacattattaaaaaaatacttactATAATAATTTAGTAATGAATAATGAGGCCTAACACTGTAAATAACTTCTTGTTATAaacaaaacttttctttttcctcttctccaCTTAACTGTATAACATATGAAggtatatgtgtaatatatattctATAATGTATGAAAGTGTCGCATTAATCACTTCAATCAGCTATTAACCAGTTAAGCGTGTATCACTGAAACTTAATTTcgtgcatttatgtaaatgtgtacagagaATTTCTGGTtgtatttttccccttttaacacatgaaataaattacagatttataaataaacactcCACAATAAAGCAATAGATACACAAGAACATCTTTAAGACGGCACAAATATGCATCGGGGCACAAATGTTATAAGAGAATATTTATGACGCTAGATTTTAGGTTATTCTTCACTGAAACATAATACTACATAACTtcttataattataaatgaaacttcatcttttgcactcaactgtataaaatgtgagtgtgtatatatacatacacatatatacacattatatttatatatataatgacgAATAACTTGCCacgttaaaatgttaaaatggagAACATTTCCCAACAAATACACTTCATCCAACAGGAGACACATTCAACATAGCagggatgaaaaaaaataataataccagTATCCTATTACCTTCTACACAGTCAATATTGCCCAGGTACATTTGTCCTAATTTATTCCAAATGTGGTTTTTCCTGTAcgaaaataaaacaagacaaacatATCATCAGTCTCTATAAATCCTCAACACAGCCAAAGCACTGAATACCAACAAGAGGCAAACACAGGACtcagaataaaaatacaacTACCGTATAAAGTTCTATTACTGAAACTTCAAGGCACAAGACTATGTTAAATAGACCATGAATGTTCTACCGATGAAGACTTGAAGCTGAATGTGTGGTTTTATTTGACCTTCATTCTCCTTTCTTGTATTATCTCGAGTGCTATAATTGAATTTGTATTTCAGGCATTCCTTATAATTCAGCTttaaccttgtttttttttgttttttttttcttcaaatatatAACATCGTACACAATCTAAAGACacaagaaatggaaaaaaaataaaaataaaagcaaataagaTCTACTAAATATAACTATTGCTCTTAAGGTAAAATAGTCTACTCCTAACATTggcttcttttaaaaaatagaaaaaaaaacactaaaatccacaaataataatttagttGGAATAGGTCTGCCACGGCATTGGGGACATCTTAAGGAGGAACAGCTTTAGGAGCCCATGCGTAACCGTCATCTCAGATCTGAGAAATCAACtggaatagaaaaaaaaatctgaataacgTAAAAACTATTCTTGTCCAACTtaactgaagtttttttttttttttttttgattcctttttgttggttttttttgtccttttttttttttaaactgaagtgCACAAACATACAAGTAACCTTGTAGTTTCGCTGTGTACAGCCGTGTTCAGGTTTTGGGTGAGAATCCTGCGCTCAGACTTTTTGGCCGGCTCTCGGAGAGGAGTGttccagaggaaaaaaaaaacaaaacaaaacaaaaaaaaaaaaaaacattgttacgAAGAATAGTAAAGGGCAAGCAATGTACTAACTTCTAATGGCAATCATGCATACTGATACATGTTCACGTACATAGCATGTAAATTTTGGCTACAGGGACACGAGGACATTCCATAGCATATTTGTCTGCCAGAGGCACAAAACAGATATAATAAAGGTCATTTCATGTTTACTTATAGGACCCccgttgttggtggtggtgttttttgttttttttgacagtGGGCATTGAGTGATACAAAAAGCATAAATCACTGTGTAAGTGGAAGGTTACATGGATATGTCTTCTCTATGGACACCATATGACCAGatgatgaaaaataacaaatggtACAGCAAAGATTAATGGAGagcctgctttaaaaaaaaaaaaaaaaaaaagaccaaatcaGCCCATCTTGATTTAACCTCTTGTTTTGCTAAGTTGGGATAAAGgcatctcctttttttttttcttttatttatttcttttttttaatcaaaggcCACCTTGGTCAGATTCCCAAAATGAAGGCACTGCCCATTCTGTGGCAGACCgctgctgtttttctctcacacagcGCTGTCGatatttacacattaatttAACGTAGAGCCACGACCACTGCAATTCAGGTGATCCTTTTtttgttgcttgttttttttgatCTCACGCCAGTTTGTCACGATACATTTCATGTGTACACATTCCATGCTGTGCTTGCATACTCAACACTGTAATCCTCGAGCCTCCCCTCTCAGATTAGTCAGACCAGGAACGACGACATCTACCACATGTAGGTCAGGTGCGTCATAGTCCGCTGGTTAAGATCTCTGTTCCAGCAAGTCACACGCATCACACATcctggatcttttttttttttcctccagtcgAGGTGAGCACTCAATACATGTGATCTGCTGGAACAGAGCAAGCTAGTGGGATCTGAAGATGCTTGAGACCTCAGTGATCGGACCTCAAGCAGGTAACCATGTGCGAACGCACCTAGGAATGCCTTCGAAtcaatctttcttttttgaGATAATTTCATAGCCCTTTTCTCTAGAGCGCAAGTGCTCTAGTTTCTCTGTGTCCTCTTCCCCACTGGCTAGGGTCGAGGTGGAGAGGAGGCTAAAGGATGAGTTCTGTCAAGCACCACTTCTGTACACTGACCTTcgatgaaaggaaaaaaaaataaaagtagataCTAGtagaaacttaaaaaaattttatatttctctGGTGATTGTTAAAATCTAAATCGATCTACAGTCAGCTAGAGAAAGGGAGGTTTTCTAACATCTTTAAGATACCGTATAATGAAACACTCACTATCCTAAAGCACACTTCATAAAAATGACTCATGTGTAGCTCTCAGttgcatgctttttttaaacacgaGTGAACGCTACAATGtggttctaaaaaaaaaaaaaaaaaaaaaaaaatagatgacaCTGTGGATTCAAAGTTCAACAAGAAATGAAGAGCATGTTGAGCGCtcttttctgatgtttgatgattTGACCTTCATCAGCAGGGAAAGCATCAGCAAGGATGTAGAAATTGAATCGCACACTTCCCTGAAATGAACACTTCAATGACTACCAATCCTTCTCGGCCAGAAGGCTTCCTgtagaaggaaaaataaatgggGGATGTCTATAAGGTATTACCAGTTAAACGTTTCCACTACCATAAAAGCACTGCTTCATGTGAGAGGAGTTAACGACTCCTCGTAATGGCCTCCACTTGTACATCATTGGCCATTattatgcatttaaataaaatagatgaGATTAGCCTGTGGTCAGGCATCGTCTCCATACGTCTCTATacatgtatttctgtaaatcaACTGAGTGCCTCGCTACAATCACACTCATCAATGTTACATCTTTATGCGTACTGTCTCGTGTCAGTACCTCATGGCTTTAGAGGAGAGGGGAATAAAAAGTCGCTCAAAGGAATGAAATGAGGAAGGATATACCTCACATCCGCTGTGAGTCTGCAAACTGCGCTACGGTCTAAAAGAAGACAAAACGGACATGAAACAGAAATGTGTGACTTCATGTGTGACTTTGAAATGTGGGGGAGGCCCTGATATCTCAACGATCTTCCACCtatgatataaaaacacacttgaTGGATGTTAATCTATCATAAAGACTTTATTTGGGTGCCTGAAAAAATGTCTGTTATTCCTTTGCTATCTCCCAAgtgcataaataaataccaaaatTTGCAAATTGTGTGACTATTTGACACTTTCTAATTAATTTCCTATGCTCATTTTTTATAGTTTAAGCCATTGATATGGCTCCATACAAGATGGCAACCCTGTAAAATCCAGACAATTTTATCATTGCaatgatattttaaatgtaaacaaaggTTAAACAGGGATTCTGAACATATCTTTGTTTTCCCTCCACTGAACTCTGAATATCCAGAAAGTGTGCGTCTCTCTTTGCGTCAAGAATGGAGTCAACGTGGATGGAGTCAACGTGAAAAATGTCCTGTGTGAACTGTCgcagctgtcatatgataggaaGTCTAGTAAATATAGCACGCATATTGTGTCTTCTGTTCACATCGACTTCCCTATTTGCTCTCCATCACCATGTcaaggagaaaaaaactgaatggCTACATTTCCAAACACTGTTGGCTCTGATGTGTTCAGGAAACACAAGGCCACTGTTTTCAATTTCACGTCATAGAAAAAAACTAGATAgataaataggaaaaaaaaaataaggaagaggaagaaaatgtGTTAGAACGCACTGCTTTGgaatttcatttctatttttttgttctcttttcacACACTTATTTAGACTGTGCTTTCAGCGTTCATTCACAAATCCATTTGTGCTTAACCCCCAAACACCTAAAAAGAAAGTATAATAGAGAAAACATTTCCTACTATATTACTGTATTAGGCTGCTATCCAGCACTGCTGAAACAGATGGCGAGGTTAATCACATTACTCAGCGTTCAGACATTCCTCTCCATATCTCTGCATTTAAAATGCAAGAACGAGAGAAAGACATTTAGGTTCAGAACTTAACCAGCCATCGCAAAACATAATTGatgtcccaaaaaaaaaaaaaaattaaaaactaccCTCTTCCCATCCCATAAGCCTTTCTTGTTTAAAACATGATTGACGGGGTACAagtgctgcagtttttttttgttttttttttttcatgaagcaTGGCCTTTCTTTTATAAAGAACTGACACTCTTCATGCAGTTAACCAGACTGCCTTCTTCTAATAGTCACTTCTATAATatgaagaaagaggagaaataTGATGTAAAATCAACCCTTATTTATAACACGTTTGTGAGGCGTCAGGTTTTGGCAGGGAAAGATTAGTTGAAAATCAGCTTCCCAGTGAAGTGTTACTTGTGCATCCATTACTATCTCAGTGTCTTGCTATTTCCTAGAAGCTCTAATGAAGCAATAACACGTGGTTCCTATGATTTCTATATTAATATAACGATAAAATGAAACTGggcaaacaaaaagaaatctgaGAATTCATTCAGAAGCGGTATGCCAGCGATTGTATCATCGCTCTGCATACAACTCACAACACTCGACACAACAGCTGCCTTTTgtaagtacatttacatttttgtggatttttttcattatttcttgtttaaaaaacagaaaaaataaaacaaacaaacaaacaaacaaacaaaaaaacaactcctCCCCCTGTGAGTGCCTCTATTCCTGCGCGAGAATACAGCCGttgctgctgattggtcagttaGTCTGAATATCAGTCACGTCCTTCAGCTCACGCGTTCGCTCACAGGCGTCCTGGACTCGACTGTTTCTTCTCGACTCGGCCTGGGAACGGCGGAAGGAGGAACAATGTCTCTCAGTTCCTTTCCATCCCCCGTCACAGTGccatgctgctgctgttgttgttgttgggttCGCAACTCCGTTGCTGCCATCTTGCCTGAAGTGTCTCTAACCGTGTTACTATCGGTTCGGGCCTCCTCCCTGCAGGCTAGCGGCTCCTGTCTCGACCTGGAAGTGCTCAAGTCCTGGGGCTCGTTCTCCACTGGGGGTCCTCCATGCATGGAGTGGCCGAGGGAAAGCTGGTGAGCCTGCGGGGTGAAGATGGACGGCTCCATCAGCGGCAGgtgatgttggtgatggtggtgatgatggtgatggtggagGTGTTTCAGTTGTTGCTCACGCTGATCTCTCTTTTTGTGGACTTTTGGTCCACTGCTGCTGCCATTTCCAGAATCCATTGCTTCCTTATGCTTCCGGCTTGAGTGCTTGTGAAGCTTCTGTCCTGTTTCTGACTCCACTCCAGCAGAGGGCGCCGTTTGACTCACAGGTCGTTTTGCTACACTGCTTGGTGCCTCGGGTGTAGTCGTAGTAGATCCTTCTGCCTCCTCCATAGTCTCCCGTGTCTTGCGCTTCTTGATGGGAAGCGCCTTCTCCTGCACAGGCTTGGCTGCCAATTCCTTTTGCGCTTTCTTCTTGGCCTCCGATGTCGCGATAGCTGCAGCAGCGTAAGCTGCACTGGAGCCTGTCCCTCCTGCCGCAGACTGAGAAGCAGCTGCCGGCTTCCTACCACGTTTCTTTGGCGCGCTTGCCTgctctttttctgcttttctcttgCGTCCTGGGCGCTGTTTGACGACGGGGACTTGCCCTGAGGGTGAGCCTGCCTCCGATTTCGGAGCCACGAAGGGCATCTTGACGAGGAGTTTGCCCGGACTCTTTTCTACCACACGTTTCACCGCTACACCCTCTGTGGCCTGCCGTACTTTGCCACTGCCCTTCGGCCGGCCCCTCCCTCGGCCAGTCGGCTTGGCCACTTTGGGCTTCTTCGGCGGTCTCTTCTCCCTGCGCGATGGGCTCCCGCGCCCCGTGACAGTAAAGTCAAAGTCATTTGGGTCTGTGGTGGTGTCACCCACCTTTTGGAAGTACGCCATGAGCTCCACTTTGGAACGGAAGGCTTTCCCTTCTG

Function


symbol description
mecp2 Enables DNA-binding transcription factor activity. Acts upstream of or within several processes, including axonogenesis involved in innervation; sensory perception of touch; and synapse organization. Predicted to be active in heterochromatin and nucleus. Is expressed in several structures, including heart; kidney; muscle; nervous system; and skeletal system. Used to study Rett syndrome. Human ortholog(s) of this gene implicated in Rett syndrome; X-linked intellectual disability-psychosis-macroorchidism syndrome; autistic disorder; severe congenital encephalopathy due to MECP2 mutation; and syndromic X-linked intellectual disability Lubs type. Orthologous to human MECP2 (methyl-CpG binding protein 2).

NR:

description
PREDICTED: methyl-CpG-binding protein 2 isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU149676 True 6870 lncRNA 0.39 2 4318210 4358056

Neighbor


gene id symbol gene type direction distance location
pcsk1nl LOC108265073 coding upstream 70553 4233994 ~ 4247657 (+)
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding upstream 140360 4153037 ~ 4177850 (+)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 186840 4119035 ~ 4131370 (+)
smim24 NA coding upstream 497119 3818404 ~ 3821091 (+)
dohh dohh,LOC106584359,LOC107745802 coding upstream 510726 3802656 ~ 3807484 (+)
LOC113535168 LOC108265824,LOC108440552 coding downstream 18578 4376634 ~ 4388950 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding downstream 36292 4394348 ~ 4445422 (+)
tfe3a LOC108265526,LOC108279478,LOC108440537 coding downstream 92520 4450576 ~ 4479625 (+)
ntpcr ntpcr coding downstream 142729 4500785 ~ 4504839 (+)
cxxc1a cxxc1a,cxxc1,LOC108265945,LOC107727409,LOC107674299,LOC108440538,LOC107743112,LOC107701818 coding downstream 147357 4505413 ~ 4512377 (+)
G126591 NA non-coding upstream 63448 4253744 ~ 4254762 (+)
G126549 LOC108265196 non-coding upstream 133130 4111574 ~ 4185080 (+)
G126529 NA non-coding upstream 185541 4069691 ~ 4132669 (+)
G126525 NA non-coding upstream 257144 4060279 ~ 4061066 (+)
G126454 NA non-coding upstream 344926 3970379 ~ 3973284 (+)
LOC113535080 NA non-coding downstream 128215 4486271 ~ 4494004 (+)
G127105 NA non-coding downstream 414738 4772794 ~ 4795256 (+)
G127147 abt1 non-coding downstream 483370 4841426 ~ 4842134 (+)
G127155 NA non-coding downstream 526964 4885020 ~ 4939386 (+)
LOC117597829 NA non-coding downstream 693175 5051231 ~ 5053827 (+)
ssuh2rs1 LOC108264961 other upstream 40133 4220650 ~ 4278077 (+)
si:ch73-233m11.2 LOC108265197 other upstream 213391 4095269 ~ 4104819 (+)
wdr13 wdr13 other upstream 540720 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 616507 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 780921 3445015 ~ 3537289 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 268029 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 385183 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1489091 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2398707 6756763 ~ 6811646 (+)
mrps36 LOC108265361 other downstream 3065945 7424001 ~ 7430997 (+)

Expression



Co-expression Network