G127105


Basic Information

Item Value
gene id G127105
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4772794 ~ 4795256 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU150236
TGTGGGTTTGTGGTTTCATCAGAACAGCAAATGGTGTTTCGTAGTGAAACCGTGAAACCAGAGTAGTAAAATAGAAACACAAATGATCAGCATTTTGGTTATCTTGGAAGATTTAAAACCAACCCATGCAAGGTCTCATATCACTTTGGTATTGACTGAGAGGAAAAGCTAAAGTCGACAAACCAAGCAGCTGCACAAAACACCACACTGAGGCGCAAAGATTTATAACTCATCATTTtaggaatgatttataatcttatagcaataaacacagagcaggTTATTGCACTGTTCTGAGAGAGGTGTACTTATTTTTAGGTGTGGAATGAGTGACAATGAGGTGGAATAGAGAGTCATGAAATCACGATCCATTTACACGACTCAGGATCGGCTGTGTGGATCGGCTGTGTGGAAGGTGACGTGTTTGCTCTGGAGATGGCACTGTAGAAAGaagaaatattagaaaaatctttaaaaagtgGCATTTGGAAGAATTTAGGTTgtgaatttctttaaaaatgacagaaataaataatgtaaggTACTGTTGTTCAAAAATTTCAAGAAATTTAGTTTTGATTTCATCACTTGTTTAACtgagctgagtgcaaaagtttgcacacccttagaacaaaataaagacaagtGCGTTTATAGCAGTGACGTGTAAAGTCTCACAAATACTGTTGATTgagatattaataataaatctaaattATATCAAATTTTgcctttttaaactttttttttactttctcccactttatttctttataactGCCAACAAAACTCTTTTTAATCCTCACAAAATCTCTCAAGTcctaaaaattatttaatttttttttcatttacaaatcATGAGCAATTTGTAAATGCAGCTCATTCAGATAAAATACACTCAGTTCCTAAAAgacattatgatttttttttttttcaaaaatatggtAACATTTTGATAATCAAGTGCACAATGCTGGGATCACTCAACAGGAAACTTCTAAATGTTGTCACTGCAGCTGCTGAgcggcgcaacagaaaagctttcAATGCCACAGGCATCCACGGCTAGAAGCAAAACTGGCTGCACTTTCTCGCccgtcagtcacagtgacattaaCCACTTgagggtgtctgtgagctcatgtatgtggaagagggcagacagcgctttcctctgagtgttacgctgctctgtgatgcagcatgatgcagttggctggcttcatacGCCTccgaggaagcacgtgttagccttcactgtCTGCGCTTGGCAAAGCTGGCTGGTGGGCGGAAATTGGCAGATTggcaaattggggagaaaaatcgTTAGAGTTGCCTTTTATTTTAGCAGGAAGAATTTTTGGGCAGTGATTTTCACTCTGAAATAATGTCTGACCCTCATGTTCTGAAGAAGCCTTTAGGCCAATTAAAAAAGTCAGTAAAATAAGGTGTATgttaaatgtgtgaaaatgaaaccGTGTGATATCGTGAAACAGGATTAAACAATGGGCCATTAATGTGATATAAAAACTGAATGTTCTAATAATAATCTGTGAGAATGAAAATGGATGTGAAGCAGAGATgagttaaatgtaaatgaagaaaACCATTAACATTTTACAGCATTCTGTACAAATCAAACGGTGTAGAATTGATTATATATGAATTTTTACATTCATATCCTGATATCCTAAACCTGCAGTGAGAAATTCATACacaagttaattaattaataaataaaaaaggaacaaaCATCGAGTTTGGGCCAATGATTGTATTGCCTGAAAAACagaattcacattttttttcgtCCTCCTGCACAAAAACATgtttcagtctgtgtgttgcTCCGAGTCGACTTCCTGCTTCAACATCAGCAGCAGGCTCGGAGAAAGTCCCGGAAGTGTCTGGAAATAACAGTCCAGTCAGCCATGTTTCCACATCCTCAGTCCTTCGGAAGCGACAGCGAGTGGCGTGATGATCAGTCCAAGTTTGCACACTTTCCAGACTTTGGTGAAAACATGTGGACTATTGCAAGAGCGAGAACACAAAGTCCATGTGTAATCATGTTATAACAtcttcactcatttttttttttgagggacagggagtgtgtgtgtgtctctttacACATCCATGGCATCAGATTTGTCTAAAATTAGTGACTGCATAAATAATCTTTTAGAGCACGCTGAATATAAATGAGAAAACAGGCTTGGGTTCTTGGAGCTAAATGAGAGATTTACAGTGGGTATTGCTTTCTCATCAGCAGGTGTGTAACGTGTCCCCACGTTCACCTCcgcacacatacacaaacacacacacaggttacgCTGCTGTCATCTTGCTTATATATTCCTGTGGTGTTTTGGTTAAAACTCGGCCTAGACTAAATTCACCAGAATTATTTCTTCTTAAATCATGCAGAAAAGTGACATGATACCCCTCAGATCCGACAAATCATCactaaacacaaaaaacaaaatggctggtTAAagggctcatttgcatatttcagcTTTCTGCAATATCAGCACTGCAAAGGCCAGTGTTGTAAGAATTATTAACAAACACACGGATGGACACATGATAActacattagctagctttttCACTGGGAAAtaaaaagctccagtgtgctgtccAGTCCTACGTTTTGGATGCCTGGAAACCTgacaaggttaaaaaaaagtgatatctaatgtaatgtaataaagtacGGAGCCAGTTAGATAGTTTAGTTATGTTAATACAGTCTAACAACAAGTATATGATAATTATCcttttctaatgtagcacaacATATTTGTGACCTCAGCAAAAATTCAGCAAGCCATTGGCCGGTGCTTTGGCGATGAGCTGTAGTGTCTTCTCCTtgtaattgcatgtaaacaaTATTATTCAAGTGTGACgagtgtctttattttcttttgataaATTTAACCGTGAAGTGACTGCGTGTAGGAAGCAGGAGAGGTACATATCGTCTTTGTGTATTAATTTGTGGAAAGATCTCCGGGCTTCCATGCACACTATAAAAATCGTTCTAGGTCGACCAGATTGCGTAcggtgtgtagtgcagcaggtggtgggatttggATAGTTACAGCATTGTAGTGTGTCGCACAGATATGAAGCGGattatgtttaaacatatgGACCACATGAAAGGTTTTGTTCTGCGTAAGTCAACACGCCGTAggtaattttaatttatattttgttgAACCTACTCATCCACTACATATAAAAGACACGGATTGAATGATTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150236 True 3272 lncRNA 0.38 2 4772794 4795256

Neighbor

gene id symbol gene type direction distance location
abcd1 abcd1,LOC108265308,LOC108440542,LOC107674359,LOC107727428,LOC107552221,LOC107743108,LOC107701814 coding upstream 148884 4604816 ~ 4623910 (+)
si:ch211-169p10.1 LOC108265917 coding upstream 169429 4543540 ~ 4603365 (+)
mbd1a LOC108265790 coding upstream 232538 4512555 ~ 4540256 (+)
cxxc1a cxxc1a,cxxc1,LOC108265945,LOC107727409,LOC107674299,LOC108440538,LOC107743112,LOC107701818 coding upstream 260417 4505413 ~ 4512377 (+)
ntpcr ntpcr coding upstream 267955 4500785 ~ 4504839 (+)
comta comt,LOC107584930 coding downstream 22964 4818220 ~ 4841052 (+)
grm6a grm6a,LOC100304477,LOC108439669,LOC107601768,LOC107743101,LOC107674373,LOC107653428 coding downstream 63951 4859207 ~ 4924764 (+)
usp11 usp11,LOC108245781 coding downstream 140710 4935966 ~ 4961116 (+)
uxt uxt,LOC107734525,LOC107674348,LOC107584886,LOC107601756,LOC107743136 coding downstream 172970 4968226 ~ 4972284 (+)
elk1 elk1,elk3,LOC107381921 coding downstream 180672 4975928 ~ 5001520 (+)
LOC113535080 NA non-coding upstream 278790 4486271 ~ 4494004 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding upstream 414738 4318210 ~ 4358056 (+)
G126591 NA non-coding upstream 518032 4253744 ~ 4254762 (+)
G126549 LOC108265196 non-coding upstream 587714 4111574 ~ 4185080 (+)
G126529 NA non-coding upstream 640125 4069691 ~ 4132669 (+)
G127147 abt1 non-coding downstream 46170 4841426 ~ 4842134 (+)
G127155 NA non-coding downstream 89764 4885020 ~ 4939386 (+)
LOC117597829 NA non-coding downstream 255975 5051231 ~ 5053827 (+)
G127198 NA non-coding downstream 260377 5055633 ~ 5055834 (+)
G127210 NA non-coding downstream 402670 5197926 ~ 5202226 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other upstream 6418 4743239 ~ 4766376 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other upstream 44914 4626085 ~ 4727880 (+)
ssuh2rs1 LOC108264961 other upstream 494717 4220650 ~ 4278077 (+)
si:ch73-233m11.2 LOC108265197 other upstream 667975 4095269 ~ 4104819 (+)
wdr13 wdr13 other upstream 995304 3750504 ~ 3777490 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1051891 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 1961507 6756763 ~ 6811646 (+)
mrps36 LOC108265361 other downstream 2628745 7424001 ~ 7430997 (+)
smim1 smim1 other downstream 3060748 7856004 ~ 7861570 (+)
LOC113526371 NA other downstream 3172979 7968235 ~ 7971749 (+)

Expression


Co-expression Network