G128768


Basic Information

Item Value
gene id G128768
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7769090 ~ 7770368 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU152104
TGAAGcataaactttcagctttaattcaaggggtttaacaaaaaatattgcattaactgtttaggaattacagccgtTTTTTTAGAGTCcctctattttcacaggctcaaaagtaaatGGACAAActtacataattataaatataaagctaattttaatacttggatgcaaatactttgcagtcaatgactgcctgaagtctggaacccacagacatcatatgctgagtttcctccctcgAGATGTTtgtcaggcctttactgcagccgccttcaggtGTCGCTTGTGTGCgagtctttctgccttcagatttgtcttcagtaagtggaaagcatgctcagttgggttgaggtcgggtgactgactcagccatttaagaacattcaatTTATTTGCCTTAGGAAgctcttgagttgctttcacggtacgttttgggtcattatccatctgtactgcaaagtgctgtcctatcagttttgcagcatttgactcaatctgagcagaaagtatagctctatatacttcagaattcatcctgctacttctatcagcagtcacatcatcaataaacaccagtcacccagttccattggcagccatacttgcccattgctgagctcaccagtgcatgccttctttttaagaatgtaccacaTTGATGATTTGGCCattcctaaagtttctgctatctctctgataggtttgtattgttttttcagcctaatgatggcctccttcacctgCATCCACACCTCTCTGGACGACATATTGAGAGCTAGCAAATACAAATTCTGGACCACatattcccatgaacagctagcaaatacaaattcaacacttggaattaactacagaccttttatctccttaatctgTCATGAAATAAAGAGGACACAGGCCACCccaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152104 True 909 lncRNA 0.40 2 7769090 7770368

Neighbor

gene id symbol gene type direction distance location
LOC113535261 tmem252 coding upstream 72521 7694733 ~ 7696569 (+)
ndufaf2 ndufaf2,LOC107752447,LOC107657848 coding upstream 81752 7684995 ~ 7687338 (+)
rab3c rab3c,LOC107743864,LOC107599832,LOC107700568 coding upstream 277025 7483160 ~ 7492065 (+)
pola2 pola2,LOC107710902,LOC107549784 coding upstream 348714 7414349 ~ 7420376 (+)
kif2a zgc:103670,LOC107725322,LOC108412807,LOC107698990,LOC107598984,LOC107557201,LOC107720814,LOC108265363 coding upstream 358195 7395565 ~ 7410895 (+)
cep104 cep104 coding downstream 103025 7873393 ~ 7909722 (+)
c8h1orf174 c5h1orf174 coding downstream 146398 7916766 ~ 7921741 (+)
si:dkey-20d21.12 NA coding downstream 184355 7954723 ~ 7959217 (+)
LOC113528372 fsbp coding downstream 347209 8117577 ~ 8122886 (+)
si:dkey-72l14.3 LOC108265127,LOC107717507 coding downstream 528987 8299355 ~ 8301673 (+)
G128761 NA non-coding upstream 345 7752134 ~ 7768745 (+)
G128757 NA non-coding upstream 2366 7744867 ~ 7766724 (+)
G128759 NA non-coding upstream 18161 7750589 ~ 7750929 (+)
G128714 NA non-coding upstream 68291 7660055 ~ 7700799 (+)
G128703 NA non-coding upstream 79862 7617545 ~ 7689228 (+)
G128795 NA non-coding downstream 43287 7813655 ~ 7813854 (+)
G128798 NA non-coding downstream 45989 7816357 ~ 7817089 (+)
G128805 NA non-coding downstream 54475 7824843 ~ 7825109 (+)
G128811 NA non-coding downstream 63148 7833516 ~ 7834658 (+)
G128777 NA non-coding downstream 72165 7842533 ~ 7846157 (+)
mrps36 LOC108265361 other upstream 338093 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 957444 6756763 ~ 6811646 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other upstream 1861144 5847147 ~ 5907946 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other upstream 3002714 4743239 ~ 4766376 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other upstream 3041210 4626085 ~ 4727880 (+)
smim1 smim1 other downstream 85636 7856004 ~ 7861570 (+)
LOC113526371 NA other downstream 197867 7968235 ~ 7971749 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other downstream 536796 8307164 ~ 8312656 (+)
cebpb LOC108265421 other downstream 1691720 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 1890447 9660815 ~ 9665693 (+)

Expression


Co-expression Network