smim1 (smim1)


Basic Information

Item Value
gene id smim1
gene name smim1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7856004 ~ 7861570 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU152139
TCTTGGCCTGATTATCAGTGAGCAGCAGAAATCACAGAGGCTTTACGACAGTGAGTAAAGGTTCAGCTAAATGAACTCCCAGACCTGCTGCTCTTAAGCAAAGGCATAAATAAGACGGAAAGAGAGGAGCATATCTTCCACTCTGTGTGCACTGAACTTTCttgtCTCTATACACTCACAGAAGGTGGGTAGGAGATGGAGTCTGGCGAAGCTACTGTACAGTACAACCGATGGAATGAAGACAACATTAATATGAATGTAGCTGCTTCTCAGACTAGTCTGAATGGGATCTATAACAAACTGTGCACGGGGCAGCTGGGCGTGGTTGTGAGAGTGGCAGGTTCGCTGGCTGTAATGGCTTCCATGTACATCCTCGGCTACGTCACTGGATACTACGTCCATAAATGCTGACACTGTCAAAGACGTTTCACTACTGTCGCCAACAGCATATGATGAATGAATTAACTGtgaagtgatttattcattctttctccATGTATGAAACAAATTTTACTTGAAGTTTCAGTTTTTACCAGTGTTATGAAAATGTTAATGAGAATGCTTTTATCATGTATGATTTTATTTGCTCCACTGGA
>TU152140
TCTTGGCCTGATTATCAGTGAGCAGCAGAAATCACAGAGGCTTTACGACAGTGAGTAAAGGTTCAGCTAAATGAACTCCCAGACCTGCTGCTCTTAAGCAAAGGCATAAATAAGACGGAAAGAGAGGAGCATATCTTCCACTCTGTGTGCACTGAACTTTCGTAAGTACGACTCATACTTAGATAAGGCACTGGCTGTTTTTAACATATTACTTCTCAAACTGCTGAATCAATGCGTCAATAAGAACTGGCTGGTTTGTGAAAGAGTTATTACTGTTTGCTTGAGTTGAAGGTCACCAATAGTTAACAATTAATAAGTGCTTGTGTATTTTTGGAAGACTTAAAGATAGAAAATCTTACAAAAGCAAGCTGTATTTTATATGCAACAAATAAGttgtCTCTATACACTCACAGAAGGTGGGTAGGAGATGGAGTCTGGCGAAGCTACTGTACAGTACAACCGATGGAATGAAGACAACATTAATATGAATGTAGCTGCTTCTCAGACTAGTCTGAATGGGATCTATAACAAACTGTGCACGGGGCAGCTGGGCGTGGTTGTGAGAGTGGCAGGTTCGCTGGCTGTAATGGCTTCCATGTACATCCTCGGCTACGTCACTGGATACTACGTCCATAAATGCTGACACTGTCAAAGACGTTTCACTACTGTCGCCAACAGCATATGATGAATGAATTAACTGtgaagtgatttattcattctttctccATGTATGAAACAAATTTTACTTGAAGTTTCAGTTTTTACCAGTGTTATGAAAATGTTAATGAGAATGCTTTTATCATGTATGATTTTATTTGCTCCACTGGA
>TU152143
GACCAAAGTTCAGGTCCTGTCTTGTAAGAGTTGCCATGGTTACGTATtaggaaaatggaaaatggaaaaaaaataaaataaaataaaataaggggTTTGCAAAGACTAGCAGATCAGATCACTGGTGTTGAGTTACAGAAGGTGAGAATTGTCAGCTAAATTCCATCGTTTCAGTTAGCGTGCTTCCTTTTTAGATAAAGCAAACCTGACAGACACGGCATATAAAACAAGGGcttaataaaattacaaattcaACACAATGCGATTCTACCAAAGCGACGTTATCCTGCAGATTAGCTAGTTAAACTGCCTCTGTCATTTACAGTGCGGAGACATTCTTATGCAGGAAGAAACtcatttaatttcacaaaaagctttaatgtaattaaactaaatatgtaaaataaattcagcgACCCCTCTCAGGACACTTCAAACTGTCCCCGCGCCGCCGACTAGCTAGCTATTAGAAATTAATGTTTACAATTGACGTGCGCCGGATTTCTTCGTGACATCAGTAACAGCGAGCAGCACTGAACAGCACCGAACAGCGCCGCCGCCCCCTAGTGCCCTGGAGGAAATACAAGCCACAGGCACACCTGCAGTATACATTAGCTATGGTGttgtCTCTATACACTCACAGAAGGTGGGTAGGAGATGGAGTCTGGCGAAGCTACTGTACAGTACAACCGATGGAATGAAGACAACATTAATATGAATGTAGCTGCTTCTCAGACTAGTCTGAATGGGATCTATAACAAACTGTGCACGGGGCAGCTGGGCGTGGTTGTGAGAGTGGCAGGTTCGCTGGCTGTAATGGCTTCCATGTACATCCTCGGCTACGTCACTGGATACTACGTCCATAAATGCTGACACTGTCAAAGACGTTTCACTACTGTCGCCAACAGCATATGATGAATGAATTAACTGtgaagtgatttattcattctttctccATGTATGAAACAAATTTTACTTGAAGTTTCAGTTTTTACCAGTGTTATGAAAATGTTAATGAGAATGCTTTTATCATGTATGATTTTATTTGCTCCACTGGA
>XM_026916265.2
AGAACTGGATTATGCCTGTGGTGCAAACACTGTACTTAGATTTGACCAGCTCCTCACTATATTATCAAGATGCCCGAAGACACAGTAGCTAAGCCAACCGCCACTTTTAAAAGCTCTGCCTCAGCAAATACTTTACATTACACAGCTTGAATCTTGGCCTGATTATCAGTGAGCAGCAGAAATCACAGAGGCTTTACGACAGTGAGTAAAGGTTCAGCTAAATGAACTCCCAGACCTGCTGCTCTTAAGCAAAGGCATAAATAAGACGGAAAGAGAGGAGCATATCTTCCACTCTGTGTGCACTGAACTTTCttgtCTCTATACACTCACAGAAGGTGGGTAGGAGATGGAGTCTGGCGAAGCTACTGTACAGTACAACCGATGGAATGAAGACAACATTAATATGAATGTAGCTGCTTCTCAGACTAGTCTGAATGGGATCTATAACAAACTGTGCACGGGGCAGCTGGGCGTGGTTGTGAGAGTGGCAGGTTCGCTGGCTGTAATGGCTTCCATGTACATCCTCGGCTACGTCACTGGATACTACGTCCATAAATGCTGACACTGTCAAAGACGTTTCACTACTGTCGCCAACAGCATATGATGAATGAATTAACTGtgaagtgatttattcattctttctccATGTATGAAACAAATTTTACTTGAAGTTTCAGTTTTTACCAGTGTTATGAAAATGTTAATGAGAATGCTTTTATCATGTATGATTTTATTTGCTCCACTGGAATTTGTACAATGTATGCTTTGTGTTAATTTGAAATTGTATTAAAgcatttcatattaaa
>XM_026916274.2
TGCTGAATCAATGCGTCAATAAGAACTGGCTGGTTTGTGAAAGAGTTATTACTGTTTGCTTGAGTTGAAGGTCACCAATAGTTAACAATTAATAAGTGCTTGTGTATTTTTGGAAGACTTAAAGATAGAAAATCTTACAAAAGCAAGCTGTATTTTATATGCAACAAATAAGttgtCTCTATACACTCACAGAAGGTGGGTAGGAGATGGAGTCTGGCGAAGCTACTGTACAGTACAACCGATGGAATGAAGACAACATTAATATGAATGTAGCTGCTTCTCAGACTAGTCTGAATGGGATCTATAACAAACTGTGCACGGGGCAGCTGGGCGTGGTTGTGAGAGTGGCAGGTTCGCTGGCTGTAATGGCTTCCATGTACATCCTCGGCTACGTCACTGGATACTACGTCCATAAATGCTGACACTGTCAAAGACGTTTCACTACTGTCGCCAACAGCATATGATGAATGAATTAACTGtgaagtgatttattcattctttctccATGTATGAAACAAATTTTACTTGAAGTTTCAGTTTTTACCAGTGTTATGAAAATGTTAATGAGAATGCTTTTATCATGTATGATTTTATTTGCTCCACTGGAATTTGTACAATGTATGCTTTGTGTTAATTTGAAATTGTATTAAAgcatttcatattaaa
>XM_026916283.2
CGTGACATCAGTAACAGCGAGCAGCACTGAACAGCACCGAACAGCGCCGCCGCCCCCTAGTGCCCTGGAGGAAATACAAGCCACAGGCACACCTGCAGTATACATTAGCTATGGTGttgtCTCTATACACTCACAGAAGGTGGGTAGGAGATGGAGTCTGGCGAAGCTACTGTACAGTACAACCGATGGAATGAAGACAACATTAATATGAATGTAGCTGCTTCTCAGACTAGTCTGAATGGGATCTATAACAAACTGTGCACGGGGCAGCTGGGCGTGGTTGTGAGAGTGGCAGGTTCGCTGGCTGTAATGGCTTCCATGTACATCCTCGGCTACGTCACTGGATACTACGTCCATAAATGCTGACACTGTCAAAGACGTTTCACTACTGTCGCCAACAGCATATGATGAATGAATTAACTGtgaagtgatttattcattctttctccATGTATGAAACAAATTTTACTTGAAGTTTCAGTTTTTACCAGTGTTATGAAAATGTTAATGAGAATGCTTTTATCATGTATGATTTTATTTGCTCCACTGGAATTTGTACAATGTATGCTTTGTGTTAATTTGAAATTGTATTAAAgcatttcatattaaa

Function

symbol description
smim1 Acts upstream of or within nucleate erythrocyte development. Predicted to be intrinsic component of plasma membrane. Orthologous to human SMIM1 (small integral membrane protein 1 (Vel blood group)).

NR:

description
small integral membrane protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152139 False 596 lncRNA 0.42 3 7857854 7861511
TU152140 False 828 lncRNA 0.39 3 7857854 7861511
TU152143 True 1058 lncRNA 0.41 3 7856004 7861511
XM_026916265.2 False 806 mRNA 0.41 3 7857703 7861570
XM_026916274.2 False 666 mRNA 0.37 3 7858075 7861570
XM_026916283.2 False 610 mRNA 0.42 3 7856511 7861570

Neighbor

gene id symbol gene type direction distance location
LOC113535261 tmem252 coding upstream 159435 7694733 ~ 7696569 (+)
ndufaf2 ndufaf2,LOC107752447,LOC107657848 coding upstream 168666 7684995 ~ 7687338 (+)
rab3c rab3c,LOC107743864,LOC107599832,LOC107700568 coding upstream 363939 7483160 ~ 7492065 (+)
pola2 pola2,LOC107710902,LOC107549784 coding upstream 435628 7414349 ~ 7420376 (+)
kif2a zgc:103670,LOC107725322,LOC108412807,LOC107698990,LOC107598984,LOC107557201,LOC107720814,LOC108265363 coding upstream 445109 7395565 ~ 7410895 (+)
cep104 cep104 coding downstream 11823 7873393 ~ 7909722 (+)
c8h1orf174 c5h1orf174 coding downstream 55196 7916766 ~ 7921741 (+)
si:dkey-20d21.12 NA coding downstream 93153 7954723 ~ 7959217 (+)
LOC113528372 fsbp coding downstream 256007 8117577 ~ 8122886 (+)
si:dkey-72l14.3 LOC108265127,LOC107717507 coding downstream 437785 8299355 ~ 8301673 (+)
G128777 NA non-coding upstream 9847 7842533 ~ 7846157 (+)
G128811 NA non-coding upstream 21346 7833516 ~ 7834658 (+)
G128805 NA non-coding upstream 30895 7824843 ~ 7825109 (+)
G128798 NA non-coding upstream 38915 7816357 ~ 7817089 (+)
G128795 NA non-coding upstream 42150 7813655 ~ 7813854 (+)
G128823 NA non-coding downstream 41930 7903500 ~ 7904383 (+)
G128775 NA non-coding downstream 65996 7927566 ~ 7929704 (+)
G128837 NA non-coding downstream 110784 7972354 ~ 7998833 (+)
G128851 NA non-coding downstream 118074 7979644 ~ 7994612 (+)
G129096 NA non-coding downstream 196803 8058373 ~ 8058715 (+)
mrps36 LOC108265361 other upstream 425007 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 1044358 6756763 ~ 6811646 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other upstream 1948058 5847147 ~ 5907946 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other upstream 3089628 4743239 ~ 4766376 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other upstream 3128124 4626085 ~ 4727880 (+)
LOC113526371 NA other downstream 106665 7968235 ~ 7971749 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other downstream 445594 8307164 ~ 8312656 (+)
cebpb LOC108265421 other downstream 1600518 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 1799245 9660815 ~ 9665693 (+)
G130390 NA other downstream 2496376 10357946 ~ 10358315 (+)

Expression


Co-expression Network