G129125


Basic Information

Item Value
gene id G129125
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 8128161 ~ 8128430 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU152569
cacacacacagcacaacaacaaaaactcgGCCCAGAAACCCACAGAAACCAGAACTTAAGTAGGGGTGCTTATTAGGgttaacacaaaacaggtgtggGTGATCAGTGGGACATgtgacatggtcatgtgacatgctggggctgatgggtaatgtagttcagcGCAGATTTTGAACTTCTTAAATGATGAAGGTGTAAGTAGGCTTAACTTGCTCTTTTTTGGTTAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152569 True 229 lncRNA 0.44 2 8128161 8128430

Neighbor

gene id symbol gene type direction distance location
LOC113528372 fsbp coding upstream 5275 8117577 ~ 8122886 (+)
si:dkey-20d21.12 NA coding upstream 168944 7954723 ~ 7959217 (+)
c8h1orf174 c5h1orf174 coding upstream 206420 7916766 ~ 7921741 (+)
cep104 cep104 coding upstream 218439 7873393 ~ 7909722 (+)
LOC113535261 tmem252 coding upstream 431592 7694733 ~ 7696569 (+)
si:dkey-72l14.3 LOC108265127,LOC107717507 coding downstream 170925 8299355 ~ 8301673 (+)
LOC113534163 LOC108265188,LOC108425021,LOC106518891 coding downstream 266559 8394989 ~ 8402547 (+)
ajap1 ajap1 coding downstream 354653 8483083 ~ 8541426 (+)
LOC113533404 NA coding downstream 773818 8902248 ~ 8915811 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 821784 8950214 ~ 9002824 (+)
G129104 NA non-coding upstream 47884 8079967 ~ 8080277 (+)
G129098 NA non-coding upstream 56219 8071732 ~ 8071942 (+)
G129096 NA non-coding upstream 69446 8058373 ~ 8058715 (+)
G128837 NA non-coding upstream 129328 7972354 ~ 7998833 (+)
G128851 NA non-coding upstream 133549 7979644 ~ 7994612 (+)
G129170 NA non-coding downstream 54739 8183169 ~ 8185188 (+)
G129218 NA non-coding downstream 100310 8228740 ~ 8230136 (+)
G129318 NA non-coding downstream 358801 8487231 ~ 8487447 (+)
G129401 NA non-coding downstream 417340 8545770 ~ 8545996 (+)
G129407 NA non-coding downstream 421339 8549769 ~ 8549982 (+)
LOC113526371 NA other upstream 156412 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 266591 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 697164 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 1316515 6756763 ~ 6811646 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other upstream 2220215 5847147 ~ 5907946 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other downstream 178734 8307164 ~ 8312656 (+)
cebpb LOC108265421 other downstream 1333658 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 1532385 9660815 ~ 9665693 (+)
G130390 NA other downstream 2229516 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 2415489 10543919 ~ 10563561 (+)

Expression


Co-expression Network