G129170


Basic Information

Item Value
gene id G129170
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 8183169 ~ 8185188 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU152621
CCTCAGCTTGTAATGGCAGCCCTTTACCGGATTTTAATTGCGTTTGCGTGGCTCCCCTGTTGGTGGCTAAGCTGTTGCCGGTGGTGCTGTCAGTGCACGCCGGGCGTGGACTCTCCATTGGGACAGAATCCAGGTGAGCTTGAGGACACGGCACATGCGCTGTTAACTCTTGTGCTGAAACCTTGCTGTCCATTTTACTATTAGTTTGAACAATTCTTGTTTCACTTATACTTTTGTCACTGGTGCTACTGCTGTTTTGATATTCATTctgctgtttgttgttgttgttgttgttgttactgttatAGTTCCACAAGAACAAACTTTGAACAAAGTTTAACTTAACATCTGGAGCTGACTCACCCCGCGTGCCATTTTTCTCAGTGTTCCAAGTCCCAGCGTGAGTATATAAGTCACAGGATGTCTCAGTAAAGTTCAGCTGAGCCGAGAGCTGGAAGTGTGGCATTATGTGAGTAACATTATCGCTATATTTAACTGGTGAGTCAGAGGTTTTCTTGCTTTTCGAGTCAGAGAAAGAAGAGATGAGTTTAGACATCGATGCATAATTAGTTTCTCTCTCAGCTGGGCGAAAATGGTTTCCAGTAAAGTCGGTGATACGTTGTGACACGTGACTTTTGTCAGTAATTGAACCGGCTTTGCGCGCCTTACCTTGATTTTGTGGATACTTCTGGTTGTATTTTCCTCTCTCATCTCTAAGCTTTGCATTCAGGTCAGGGGTGTCCATTAGCGTGATATGTTTATATGATAAACAGGATTGTAAAGTAACGCAAGTGAATGAGACGATGTTGCGCTCTGTGCTACTCCAATCCGTGCGCGTCAGATTGTGACTGGCTCGGTGCCTGTATCCATTTAAGAATCTTTTAGAGCAAGCTGCGTGCACGACAGTGACTCCTGTCAGCCGGCATGACTTCAGACAGATGTTTGACGGTCCTGAAAGGTGTTGCGTGCGGGACCTAGTGCTATTCCCAGCGGCTGCATGAAAACACCCCTTCCAGCCCTCTGTGGAGGGATCGATAGCATTGAAGAGGCCTCGAGAGGGACTGTCCGTTATCCATGGATTCCTTTTGTCCGGTTTATTGGCGTCCAAAACACTGCCAGCCGCATTACAATTTGAATTGTCCGTTGATGGCGACAGAGTCCACCCCTTGGCAGCGTTAAACTCCCGTTTCGAGGGCAACGAGCTGCGCTTGGGCCCGGTTCTCCAACCTCCTGCGCTCTTCTCCAAACCGGAGCGGGCATCGATACAGCCCTGTTCCTGGTGCTCACGCTGTACAGAGACCCGCCCGCAGTCGAGACGGCACAAACACGAGCATGCTCTAGTCCTTTGCACAGACCTCTTTTTTCCAATCTGAAGCAAGGGAGCGAGAAAAGGGGAAACAACGCCCTTCTGCACACCACCGGGTAGCCGCTGGTGACAGCGTCCGGTCCGAGGCGCTGGTTCTGTTGCATATGACCCATTGTAATCCAGCAGCGACGAGGCCACGGGGACTCCTGCTGCTCCGGACCGCGAGACCGGAAATTCGTGTCTGGATCCGAGCCACGCTGCTGTCCATACAGGGCGGATCTCCGAGTCGCTCTCAGCCAGAGTCCGCGCGTCTCCGGGGGCCGGGTGGTGGCGGCGCGGCGTGGCTGCTCTCCCCGGGACAACGGCGAACAAAGAGCAGAGCAGAAGGTGCAGCAGGAGCGACGGCGGCGAGCTAAAGCCCAGCAGCAGTGCAGCCATTAGTGTGGCGAGATCCTTTTTCTCcccctttctccctctctcccttctctgtagctctcagtctctctctctctctccctctctcgctctctctgtcttccgACGCCAGGTCCTCTGCCACCGCCCGACTCCTTCCGCCGTGCTCCCCCGGTCTGCGCTCTCGATGCCCCCGAGAACCTCGCATCTACTCTCGGTGTCGGGTAGAGCTCGCGCTAGCAGCAGCACGGGCGCAGCATCTTCCCTACTTACACACATCCAACATGGCTCACAGAGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152621 True 2020 lncRNA 0.53 1 8183169 8185188

Neighbor

gene id symbol gene type direction distance location
LOC113528372 fsbp coding upstream 60283 8117577 ~ 8122886 (+)
si:dkey-20d21.12 NA coding upstream 223952 7954723 ~ 7959217 (+)
c8h1orf174 c5h1orf174 coding upstream 261428 7916766 ~ 7921741 (+)
cep104 cep104 coding upstream 273447 7873393 ~ 7909722 (+)
LOC113535261 tmem252 coding upstream 486600 7694733 ~ 7696569 (+)
si:dkey-72l14.3 LOC108265127,LOC107717507 coding downstream 114167 8299355 ~ 8301673 (+)
LOC113534163 LOC108265188,LOC108425021,LOC106518891 coding downstream 209801 8394989 ~ 8402547 (+)
ajap1 ajap1 coding downstream 297895 8483083 ~ 8541426 (+)
LOC113533404 NA coding downstream 717060 8902248 ~ 8915811 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 765026 8950214 ~ 9002824 (+)
G129125 NA non-coding upstream 54739 8128161 ~ 8128430 (+)
G129104 NA non-coding upstream 102892 8079967 ~ 8080277 (+)
G129098 NA non-coding upstream 111227 8071732 ~ 8071942 (+)
G129096 NA non-coding upstream 124454 8058373 ~ 8058715 (+)
G128837 NA non-coding upstream 184336 7972354 ~ 7998833 (+)
G129218 NA non-coding downstream 43552 8228740 ~ 8230136 (+)
G129318 NA non-coding downstream 302043 8487231 ~ 8487447 (+)
G129401 NA non-coding downstream 360582 8545770 ~ 8545996 (+)
G129407 NA non-coding downstream 364581 8549769 ~ 8549982 (+)
LOC117597837 NA non-coding downstream 494454 8679642 ~ 8717232 (+)
LOC113526371 NA other upstream 211420 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 321599 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 752172 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 1371523 6756763 ~ 6811646 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other upstream 2275223 5847147 ~ 5907946 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other downstream 121976 8307164 ~ 8312656 (+)
cebpb LOC108265421 other downstream 1276900 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 1475627 9660815 ~ 9665693 (+)
G130390 NA other downstream 2172758 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 2358731 10543919 ~ 10563561 (+)

Expression


Co-expression Network