G129318


Basic Information

Item Value
gene id G129318
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 8487231 ~ 8487447 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU152785
CACAGTTAGAAATGAAGATAGCCACTACTGAAACATGTTCTGATGTTCATTTTATGTTTGCAGACTATTTGTGAAGCTTAAAAaggcaagcaaaaaaaatgctaaataaatttatatatagcTCATTTAATGGCATCGCAGCAGCCGCAGCATCTCATTAGCAGAAAACTAGCATGTCATATTGGCCACTCTGTAGATTTTTAATgccaaattcttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152785 True 217 lncRNA 0.34 1 8487231 8487447

Neighbor

gene id symbol gene type direction distance location
LOC113534163 LOC108265188,LOC108425021,LOC106518891 coding upstream 84684 8394989 ~ 8402547 (+)
si:dkey-72l14.3 LOC108265127,LOC107717507 coding upstream 185558 8299355 ~ 8301673 (+)
LOC113528372 fsbp coding upstream 364345 8117577 ~ 8122886 (+)
si:dkey-20d21.12 NA coding upstream 528014 7954723 ~ 7959217 (+)
c8h1orf174 c5h1orf174 coding upstream 565490 7916766 ~ 7921741 (+)
LOC113533404 NA coding downstream 414801 8902248 ~ 8915811 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 462767 8950214 ~ 9002824 (+)
pym1 pym1,LOC102777374 coding downstream 678531 9165978 ~ 9169576 (+)
LOC113526950 LOC108266051 coding downstream 687652 9175099 ~ 9180830 (+)
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding downstream 806933 9294380 ~ 9295483 (+)
G129218 NA non-coding upstream 257095 8228740 ~ 8230136 (+)
G129170 NA non-coding upstream 302043 8183169 ~ 8185188 (+)
G129125 NA non-coding upstream 358801 8128161 ~ 8128430 (+)
G129104 NA non-coding upstream 406954 8079967 ~ 8080277 (+)
G129098 NA non-coding upstream 415289 8071732 ~ 8071942 (+)
G129401 NA non-coding downstream 58323 8545770 ~ 8545996 (+)
G129407 NA non-coding downstream 62322 8549769 ~ 8549982 (+)
LOC117597837 NA non-coding downstream 192195 8679642 ~ 8717232 (+)
G129440 NA non-coding downstream 236217 8723664 ~ 8724070 (+)
G129439 NA non-coding downstream 238005 8725452 ~ 8725888 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 174575 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 515482 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 625661 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 1056234 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 1675585 6756763 ~ 6811646 (+)
cebpb LOC108265421 other downstream 974641 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 1173368 9660815 ~ 9665693 (+)
G130390 NA other downstream 1870499 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 2056472 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 2195631 10683078 ~ 10696831 (+)

Expression


Co-expression Network