G129439


Basic Information

Item Value
gene id G129439
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 8725452 ~ 8725888 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU152913
AGGGTATATATGCTGAGGATTTCTATTCCATCTCTTCCTTAGTACACGATCTTCATGCGTGCACAGATCTCAAAAGATGTCATCCATATGCATTtgtgtgaagaagaaaaatcaccCTTCTGCTTGACTTTCATCTGTTTTCCTGTGTTGAATATTGATTCATACATACAGCTGGGTTGAAGATCAGATGTAAATGCCTTGAGGAGAGCGCTATCACAGTTCTATCAAAACTGaacttttattacaaaatagATTATCAGTTCAAAAAGGTTACGTTGATGAAGATGAAGCTTCATGTGCCAGTTTGTTCGGGTTATCTGTAGACAACTTTGATGCAGTACGTCTCCTCGTTCTTATCGTCCAGGTCGTTGATGAAGACCAGGATCTCCTCTGTACCGGCACTCTGACTGGGAGCAAAACGCAGCCCGATGTTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152913 True 437 lncRNA 0.41 1 8725452 8725888

Neighbor

gene id symbol gene type direction distance location
ajap1 ajap1 coding upstream 184026 8483083 ~ 8541426 (+)
LOC113534163 LOC108265188,LOC108425021,LOC106518891 coding upstream 322905 8394989 ~ 8402547 (+)
si:dkey-72l14.3 LOC108265127,LOC107717507 coding upstream 423779 8299355 ~ 8301673 (+)
LOC113528372 fsbp coding upstream 602566 8117577 ~ 8122886 (+)
si:dkey-20d21.12 NA coding upstream 766235 7954723 ~ 7959217 (+)
LOC113533404 NA coding downstream 176360 8902248 ~ 8915811 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 224326 8950214 ~ 9002824 (+)
pym1 pym1,LOC102777374 coding downstream 440090 9165978 ~ 9169576 (+)
LOC113526950 LOC108266051 coding downstream 449211 9175099 ~ 9180830 (+)
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding downstream 568492 9294380 ~ 9295483 (+)
G129440 NA non-coding upstream 1382 8723664 ~ 8724070 (+)
LOC117597837 NA non-coding upstream 8220 8679642 ~ 8717232 (+)
G129407 NA non-coding upstream 175470 8549769 ~ 8549982 (+)
G129401 NA non-coding upstream 179456 8545770 ~ 8545996 (+)
G129318 NA non-coding upstream 238005 8487231 ~ 8487447 (+)
G129621 NA non-coding downstream 277581 9003469 ~ 9006784 (+)
G129704 NA non-coding downstream 386896 9112784 ~ 9123869 (+)
G129707 NA non-coding downstream 394050 9119938 ~ 9134935 (+)
G129805 LOC108265845 non-coding downstream 583615 9309503 ~ 9312451 (+)
G129831 NA non-coding downstream 598820 9324708 ~ 9337950 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 412796 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 753703 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 863882 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 1294455 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 1913806 6756763 ~ 6811646 (+)
cebpb LOC108265421 other downstream 736200 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 934927 9660815 ~ 9665693 (+)
G130390 NA other downstream 1632058 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 1818031 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1957190 10683078 ~ 10696831 (+)

Expression


Co-expression Network