G129707


Basic Information

Item Value
gene id G129707
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9119938 ~ 9134935 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153195
tttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtctttctttGGCAAAAATTTACATGAAAACAAAGCAGGATAGATTTATGGTTAATGTTGAACAACAATCTTTAATATCCGacacaaacattcattcatgcacACAAACTAAGTGAACCAAATGCCAATTTCATATGGATTCCGAGCTGGAGATGATGACAAGGAAACTTCATTGATCTTTAAGCTGTATTTTAGTGCAAGGGCAGCAGACTCTAGAAGAAAACAGTGGTGCCATTTTGTCATTGTGACAAGAATGCACAACTAGATGCAAACACTTCACTGTCGCCATAGTACTAGTAAGCATGCAGTGACTGTATTGAGAGACCAGGAATGAAAAGCACAAAGAAGCAGCCAATCGAAACGTAGTTTCAACTCTTCATGTGCTGAAACGGACTGGAGAAAAAGGTCATTCTACAAATCTATCAGGAAAGAGAACAGCCGCATAGGCTGCAGGTTGAGCTGTTAAGGCAATGGAATGGGACTTGCTATAGGGGCATtgaggttatttattttaaaccagACTTCAATTAGAGATAGCAGCACAACCACATCCTCAggatagagtttttttttattttatgcacttCAAATCCAAATTAAGCAAAGCACAGCCCTGGTTTTCTGTACGGACTAACAGTTATAATGGCTGATGTATGAGGTATATCAGTCATTGTATACGAGCGAGAAAGAGACAAAGTCCTACATTTCAGTTTTAGCACCTTCAGAGGGGTCAAATGACATGCACTCGACAAACTTCAAAAGTCTGAGGAACAAACTGCTGAGTATTCCTTTACTTGGTACAAGTGTAGACTGATAGTAATACAGCATATGTGTTTGTGAAAGAACTAGCTGTAcacatgtatgcacacacacacagtcgcgTCATAAAAAGACTAAAGTGAGGTTGTTCTGTGATTAAAGGCAGGTATATTAAATGCACCGCATGCATACTGTGGAAGAATGAAAAGGGCACACGGGTCTAACCTCTGTGCCCACTGTGGCCTTTAAGTAGAGGTGAAATGGTGATCAAGGCTGTGAAACACTGCACAGCACTCTCAGGGAGAGCTGATGAAAActcaaaaatcaataaataaaaaggcaatCAACATGGCCGTAAGGTCGTAAGACCTTAATGCTGGCCAACCACGATCAGAACATTTAGCCCCATGGACAGTCCATACATTAATTCAGTCAGCAGCACTTCTTCAAATTTCTACAGAGACTAACGGTCGTGTTTCTACTTTTTACAACCATATGTACCCTTCAACACTGTACTTAACAATTGACTTCAGAATCAATGTCAAAATCTAGTTGCCCATCAGCTAAACACCATACTTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153195 True 1376 lncRNA 0.39 2 9119938 9134935

Neighbor

gene id symbol gene type direction distance location
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 117114 8950214 ~ 9002824 (+)
LOC113533404 NA coding upstream 204127 8902248 ~ 8915811 (+)
ajap1 ajap1 coding upstream 578512 8483083 ~ 8541426 (+)
LOC113534163 LOC108265188,LOC108425021,LOC106518891 coding upstream 717391 8394989 ~ 8402547 (+)
si:dkey-72l14.3 LOC108265127,LOC107717507 coding upstream 818265 8299355 ~ 8301673 (+)
pym1 pym1,LOC102777374 coding downstream 31043 9165978 ~ 9169576 (+)
LOC113526950 LOC108266051 coding downstream 40164 9175099 ~ 9180830 (+)
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding downstream 159445 9294380 ~ 9295483 (+)
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding downstream 376004 9510939 ~ 9519258 (+)
LOC113534601 klhl12 coding downstream 386519 9521454 ~ 9537110 (+)
G129621 NA non-coding upstream 113154 9003469 ~ 9006784 (+)
G129439 NA non-coding upstream 394050 8725452 ~ 8725888 (+)
G129440 NA non-coding upstream 395868 8723664 ~ 8724070 (+)
LOC117597837 NA non-coding upstream 402706 8679642 ~ 8717232 (+)
G129407 NA non-coding upstream 569956 8549769 ~ 8549982 (+)
G129805 LOC108265845 non-coding downstream 174568 9309503 ~ 9312451 (+)
G129831 NA non-coding downstream 189773 9324708 ~ 9337950 (+)
G129849 NA non-coding downstream 315627 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding downstream 318099 9453034 ~ 9454409 (+)
G129971 NA non-coding downstream 465260 9600195 ~ 9602532 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 807282 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1148189 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1258368 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 1688941 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 2308292 6756763 ~ 6811646 (+)
cebpb LOC108265421 other downstream 327153 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 525880 9660815 ~ 9665693 (+)
G130390 NA other downstream 1223011 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 1408984 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1548143 10683078 ~ 10696831 (+)

Expression


Co-expression Network