G129805 (LOC108265845)


Basic Information

Item Value
gene id G129805
gene name LOC108265845
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9309503 ~ 9312451 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153298
AGCAAATGCAGCTGCGTACTCGAAGGCATTAAGTGTATAAAAGCTCTTATCGTACATAAGTGTATGTTATAAGTTAATGCAAGCATTTAGATTCTATCTTATTTCTAAAACTATACCTCTGACTGATTCTGTGTAACGCAGATGATTTTTGAAACAGTTTGTAGGTGATTCTCCGGTACTGAACTTCTGATTCACGTTTTGCTTGACATGGGATTGTAATGAAGCTCTGATCATCCCGTACAGATATGGACAGTTCAAGCAGATTAACAactgagaataaaaaaatgaataaataaaaaaagaaatactgttAATAAATTCAAAGGATGCAATCATTCAATGCTTTAAGTTCATTACAGCACCCATTAGAAGTGTCGCAAGTGCTATGGCTCTGCAGTCTGCATACTGCATCTACTTTCGTTTTCGTTGTTTACATTCTGTCCAAATGGAAATCCCCCTTTTTTCCCTCAACACATCTCTTTAATTCGCTGGAAATGCAAACGGACACTCACGCATAGCAATGCTCAGTCGCTTCATTATTCCCCAGCTTGGTGTTTTTGTGCAGTTCAGgctttgttttttcagcagcTCCACAAGATCTGCAGCACTAGTTCCTCCTGCACACACTTTCAGTAAGC
>TU153299
GATAGTACTCGTAGTCACCATCCTGGATGTAATGACCCAGCGGAGGCCACAGAGTGCAGCGGTAATGACCGCAGTCTATCTGTCCAGCCTCTGGGAGCAGCAAAGAGTAATCATCACCCACTTCATAGGACTGGTTAGCGAATTTATAGAGGACAGTTTCCTGTGTATGCAGGTCTTTCATCACAAGACCAGTTAACATTTCAGACCTCACTTCcacctgtaaaaaaaatgaaatacaatataaaaaaaagaaaaaggcttCCTGAAAGTGGTGGATCATCCATAAGGGCAGGCAGGGCACATCCTTTTATCAACTGTTAACTCTTCAGAAAGTcttcattcacaactccatactttttaaattctgttgaaatattcctctttttaaaatgttgctatttgccagattcatttaatttgattgcctttctagatgttgcgcAATCGTGTTTGGCTCCAAACAGTTGTTAAACCTAGCGGCCAAATAAGGGAAACCACAAGAAGCACTAACAGAAGCCCACTGGGGGAAATAttatgctgccccatgctcgctcTGAGAAAATTTTAAGTGAAGGAGAAGCTGTTAATTAGAGGGTTGCCAAGGATTGCTGTTTTATGCCAAATTTTACAAAAGGTCTTGtttaattgaaaataatcaggaataaaatctaataaaaaagagagaaaggttaattatgaaatatacaatgtccatacatcagaaatgtttGTGCACCATGGTGCCCTTGTTTCCTATGCAAAAGCTGAAAAAGTAAGATGTCTGTAAGTattatgtctcttttttttttcaacagctGATTTTTTGGTCTAATTTCAGGTCTGTAGTGTGGCTTTTGAGATGTTACTGatgctggaaattttgctgaaaacCCACAAACCTGATTAATGATAAAATCATGAGCTCAGCTGTTCTGTGTGCACCTTGCACTCTAGCAACAGGAAGCATATCTACCGTATGGAACATAGCTTAGTAAAGATGCATCTAAAACCATTCAAAGTGAGCTGCTAGttgctgtatgtgtgttggAAAGAAGGGAATCTAAAAATATGATGAGACTGGAATTACTGTGGAGGATCAAATAAGCATTCATGCTCTGGAGTTCAGTGAGCTCCACTCCATTTTCTGGGTCTACGCAGAACAAAGAATGCCATGGTGATTCTCCGGTACTGAACTTCTGATTCACGTTTTGCTTGACATGGGATTGTAATGAAGCTCTGATCATCCCGTACAGATATGGACAGTTCAAGCAGATTAACAactgagaataaaaaaatgaataaataaaaaaagaaatactgttAATAAATTCAAAGGATGCAATCATTCAATGCTTTAAGTTCATTACAGCACCCATTAGAAGTGTCGCAAGTGCTATGGCTCTGCAGTCTGCATACTGCATCTACTTTCGTTTTCGTTGTTTACATTCTGTCCAAATGGAAATCCCCCTTTTTTCCCTCAACACATCTCTTTAATTCGCTGGAAATGCAAACGGACACTCACGCATAGCAATGCTCAGTCGCTTCATTATTCCCCAGCTTGGTGTTTTTGTGCAGTTCAGgctttgttttttcagcagcTCCACAAGATCTGCAGCACTAGTTCCTCCTGCACACACTTTCAGTAAGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC108265845

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153298 False 638 lncRNA 0.38 2 9311690 9312451
TU153299 True 1648 lncRNA 0.39 2 9309503 9312451

Neighbor

gene id symbol gene type direction distance location
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding upstream 14020 9294380 ~ 9295483 (+)
LOC113526950 LOC108266051 coding upstream 128673 9175099 ~ 9180830 (+)
pym1 pym1,LOC102777374 coding upstream 139927 9165978 ~ 9169576 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 306679 8950214 ~ 9002824 (+)
LOC113533404 NA coding upstream 393692 8902248 ~ 8915811 (+)
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding downstream 198488 9510939 ~ 9519258 (+)
LOC113534601 klhl12 coding downstream 209003 9521454 ~ 9537110 (+)
tuba5 tuba8l,LOC108425079,LOC108265838,LOC107711852,LOC107679810,LOC107594520,LOC103031418 coding downstream 226382 9538833 ~ 9543279 (+)
kdm5bb LOC108265643,LOC108425081 coding downstream 234855 9547306 ~ 9573038 (+)
LOC113536035 LOC108265641 coding downstream 261931 9574382 ~ 9582740 (+)
G129707 NA non-coding upstream 174568 9119938 ~ 9134935 (+)
G129704 NA non-coding upstream 185634 9112784 ~ 9123869 (+)
G129621 NA non-coding upstream 302719 9003469 ~ 9006784 (+)
G129439 NA non-coding upstream 583615 8725452 ~ 8725888 (+)
G129440 NA non-coding upstream 585433 8723664 ~ 8724070 (+)
G129831 NA non-coding downstream 12257 9324708 ~ 9337950 (+)
G129849 NA non-coding downstream 138111 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding downstream 140583 9453034 ~ 9454409 (+)
G129971 NA non-coding downstream 287744 9600195 ~ 9602532 (+)
G129996 kcnd3 non-coding downstream 359616 9672067 ~ 9672335 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 996847 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1337754 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1447933 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 1878506 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 2497857 6756763 ~ 6811646 (+)
cebpb LOC108265421 other downstream 149637 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 348364 9660815 ~ 9665693 (+)
G130390 NA other downstream 1045495 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 1231468 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1370627 10683078 ~ 10696831 (+)

Expression


Co-expression Network