cebpb (LOC108265421)


Basic Information

Item Value
gene id cebpb
gene name LOC108265421
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9462088 ~ 9471279 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153371
ttttttttttgtttgtttgtttggttttgttttgttttgttttgttttttacaaatGAGTCATTTTTGCGTGAAAATGACGaacaatgctttaaaaaaatgtttacaagaGCAAAAGAGCCTGAAAAGGGGACTGGCGCCTGGATTGCGCAACACTTTCTCCCATGCGCGATGACTGTGTCACTCTGGTGGTGTTGTGGAAGCCCGCTCATGTACTTTGGTCTGTACAGTATTTTTGTACGGGTGAAATGTCTACTGTTTTAATAATACTCTGTTATTTAAATACCTTTTCCCCCCATAATCTGGGGCAGTGGCTGTCGAGGGAAGAGTTGTACTGCAGAGGTATGATGCAACGCATTGTAACAGTATTGGCCATGCAATGAAGTAGTCTGCTAACACAGAATAACGGTAGATATCTTGtattgttatataatattttattgaattaaatgatttttatttctttttg
>TU153374
ttttttttttgtttgtttgtttggttttgttttgttttgttttgttttttacaaatGAGTCATTTTTGCGTGAAAATGACGaacaatgctttaaaaaaatgtttacaagaGCAAAAGAGCCTGAAAAGGGGACTGGCGCCTGGATTGCGCAACACTTTCTCCCATGCGCGATGACTGTGTCACTCTGGTGGTGTTGTGGAAGCCCGCTCATGTACTTTGGTCTGTACAGTATTTTTGTACGGGTGAAATGTCTACTGTTTTAATAATACTCTGTTATTTAAATACCTTTTCCCCCCATAATCTGGGGCAGTGGCTGTCGAGGGAAGAGTTGTACTGCAGAGGTATGATGCAACGCATTGTAACAGTATTGGCCATGCAATGAAGTAGTCTGCTAACACAGAATAACGG
>XM_026929048.2
TCCTCCGAAACATGGGATTTGACAGCGCGTTCACACACGAGCACACGGCGAATATCTAGattagatcagatcagattagACACATTTGTCAACTTTCCTAACTGGTGTTTCAGGAAGATTTGTACTGAAACGTTAATAGTGCttgttgctgtttgtgtgtgagtgtgtggttttggtttttttttttttttttgcgagtTCGTGGGTGTAAACTTTTGTCAGGGCAATCAGCCCCTGCTTTAGCGTCCTGCCGCAATCCGGCGGGTGTTAAGATCCATGGAAGTGGTCGGTATTTACGAAAGGGACTGCCTTGCATTCCACAGCGGCCACAGTCTGGGTCCCGTCCACGGCGGCGTGTACAAACCCTCCACTGACGGCTCGATGACGAAACTCGGCATCTCCGAGCACGAGAAGGCGATCGACTTCAGCATCTACTTGGACTCTGCTCTCCACTACCAGCAGCCGGCAATCCACGGCGAGGAGGTCTTCACCCCGGACTACCCTATCAGCGAGGACGCCAAGAGCAAGCGAGCCGCCGCGGAGGCGCCCGGGTACAAGAGCTACGCGCCGCTGACCGAGCGCGACGCCAACCGGAGCCAGCTCGGCTACCCAGAGCTTCAGGAGACGCGCCTCGACACCGTTTTCAGCCCGGACTTCCTGGGCGCCTACGGCAAAAGTCAGTGGCGAGGCGACGTGAACGAAGACCCGCGGATGGACGGATCGGGGGGCTTCGACATGCGCTCCTACCTGCAGTACCAGACGGCGCCCAGTGGAAGCCTGGGAAACATCTCCAACGCTTCCTCGTCGTGCTCTAGCCCGCCTGGCACGCCCGCTCCGCCCAGCAAAGCCAGATCGCCTCAACCTGGCGGTAAAATCCCGTCTACAGGTAAAGGCAAGAAGCGGCTGGACAAGGACAGCGATGAGTACCGGCAGCGGCGTGAGCGCAACAACCTGGCCGTGCGCAAGAGCAGGGACAAAGCGAAAATGCGCAATCTGGAGACGCAGCACAAAGTGCTGGAGCTGGCGGCTGAAAACGAGCGGCTGCAGAAACGTGTAGAGCAGCTGTCCCGAGAGCTGGCCACCCTGCGCAACCTGCTCTCCGCCACCGGCCAGTGCTAACGCTTACTTCAGCAACCTTTCTCCATAAGACTGTAAAACATCGGTTCCAAAgagtatgcattttttttgtttgtttgtttggttgttttgttttgttttgttttgttttttacaaatGAGTCATTTTTGCGTGAAAATGACGaacaatgctttaaaaaaatgtttacaagaGCAAAAGAGCCTGAAAAGGGGACTGGCGCCTGGATTGCGCAACACTTTCTCCCATGCGCGATGACTGTGTCACTCTGGTGGTGTTGTGGAAGCCCGCTCATGTACTTTGGTCTGTACAGTATTTTTGTACGGGTGAAATGTCTACTGTTTTAATAATACTCTGTTATTTAAATACCTTTTCCCCCCATAATCTGGGGCAGTGGCTGTCGAGGGAAGAGTTGTACTGCAGAGGTATGATGCAACGCATTGTAACAGTATTGGCCATGCAATGAAGTAGTCTGCTAACACAGAATAACGGTAGATATCTTGtattgttatataatattttattgaattaaatgatttttatttctttttgac

Function

NR:

description
CCAAT/enhancer-binding protein beta

GO:

id name namespace
GO:0009617 response to bacterium biological_process
GO:0001878 response to yeast biological_process
GO:0044030 regulation of DNA methylation biological_process

KEGG:

id description
K10048 CEBPB; CCAAT/enhancer binding protein (C/EBP), beta

RNA

RNA id representative length rna type GC content exon number start site end site
TU153371 False 468 lncRNA 0.37 2 9462088 9471277
TU153374 False 408 lncRNA 0.40 2 9462088 9471217
XM_026929048.2 True 1650 mRNA 0.52 1 9469630 9471279

Neighbor

gene id symbol gene type direction distance location
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding upstream 166605 9294380 ~ 9295483 (+)
LOC113526950 LOC108266051 coding upstream 281258 9175099 ~ 9180830 (+)
pym1 pym1,LOC102777374 coding upstream 292512 9165978 ~ 9169576 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 459264 8950214 ~ 9002824 (+)
LOC113533404 NA coding upstream 546277 8902248 ~ 8915811 (+)
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding downstream 39660 9510939 ~ 9519258 (+)
LOC113534601 klhl12 coding downstream 50175 9521454 ~ 9537110 (+)
tuba5 tuba8l,LOC108425079,LOC108265838,LOC107711852,LOC107679810,LOC107594520,LOC103031418 coding downstream 67554 9538833 ~ 9543279 (+)
kdm5bb LOC108265643,LOC108425081 coding downstream 76027 9547306 ~ 9573038 (+)
LOC113536035 LOC108265641 coding downstream 103103 9574382 ~ 9582740 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 7679 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 124138 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 149637 9309503 ~ 9312451 (+)
G129707 NA non-coding upstream 327153 9119938 ~ 9134935 (+)
G129704 NA non-coding upstream 338219 9112784 ~ 9123869 (+)
G129971 NA non-coding downstream 128916 9600195 ~ 9602532 (+)
G129996 kcnd3 non-coding downstream 200788 9672067 ~ 9672335 (+)
G130021 NA non-coding downstream 244377 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 562071 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 614282 10085561 ~ 10147134 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1149432 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1490339 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1600518 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 2031091 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 2650442 6756763 ~ 6811646 (+)
LOC113532719 LOC108265185 other downstream 189536 9660815 ~ 9665693 (+)
G130390 NA other downstream 886667 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 1072640 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1211799 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1235440 10706719 ~ 10741425 (+)

Expression


Co-expression Network