G129971


Basic Information

Item Value
gene id G129971
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9600195 ~ 9602532 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153514
CTTCCTGTAGCAGTTACATCACTGCTTCTTCCTCCTGCTTATTGTGAGGAACCAGTGTGATCTCTCAGACCTCCTCTGCTGACTCCTACATCATGCAGCTCACCTCAAAGACAAAGGGCAAActtataagaagaaaaaaaaagtatagttATATGGTACACTGTGCTGAGTTTAGAAAGAACGCTGGTGATGTGCAGAAAACAATGCCAACATTTCTGAGCACGCTGTTCTGTTTCCAAGttctgataTGTGTGACAATGAAGAGCAAGGCTGAAAGTGTTTTTACTGGAACAGAAGGAGGCAGTGTGGATATCTCCTACACCTTACATTAAAGGACTCTGGAGTTTATTACTGTGGAGTGGACAAATGGGGCTCTGACGAGTTGACTAAAGTAAAGCTTACTGTCAGTAAAGCTGTTCCTACTGTGTCCACTCATGCTCCAGTCTCAAGAGTGAATCAAAGCCCTGAGGCTACAGAACAACCCGATGCCTCCACAATGATAACAGCTACTGCAGTTCCTACTGAGTCAACTCGTGATCCAGTGTCGAGGCAGAATCAAAGCTCTCACAGTGATACCAAGTACTGCATGTAGGACCTAAATGCCTATTTGCTACACTCCAACTAGTAAACTCCTCATTATGTTTCTGTTAACCTATTAGCAACATCAGTAAAATAATTATTGGATTAATAATTAGATGCAAATTCAATCCTTGTATGGAACATTTAGATCCTTTTCTTGGAAAATTAGGGAGTACACAATAATTTCTTATAAAACGTGCAACATAGATATTTCTTTCATAATACTACTTCATATGAAAAGCCATCATCCAAAAGTCAGACTAAACATTCTTTAGCCCCacatgtttttcctttaatgataGCTCTGTTCTGTTTCTTATTTTCCAATATTGTCTAATCACTTGcatttaaatgatatatttaattGCCTGCTTATGATCAAAGAGGATTCTTGaataagtaaattattaaaaatgaaaatggattaCTCTGTTGATCTTACCTGAAAacctgtgttcatttactgCCAACTGCTTCTAAGGGTTCCGAAATTGTGAGTAAATATTTCTGGATTGGATCTAAGAAAGTGATTGAACTGTGAGAAGCTCCATGGTGAAATGGTGCATTCATcttgaataaaaaacattaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153514 True 1170 lncRNA 0.38 5 9600195 9602532

Neighbor

gene id symbol gene type direction distance location
LOC113536035 LOC108265641 coding upstream 17455 9574382 ~ 9582740 (+)
kdm5bb LOC108265643,LOC108425081 coding upstream 27157 9547306 ~ 9573038 (+)
tuba5 tuba8l,LOC108425079,LOC108265838,LOC107711852,LOC107679810,LOC107594520,LOC103031418 coding upstream 56916 9538833 ~ 9543279 (+)
LOC113534601 klhl12 coding upstream 63085 9521454 ~ 9537110 (+)
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding upstream 80937 9510939 ~ 9519258 (+)
LOC117597803 LOC108265688,LOC108265689 coding downstream 8261 9610793 ~ 9614695 (+)
LOC117597805 LOC108265689 coding downstream 13072 9615604 ~ 9620956 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding downstream 21768 9624300 ~ 9637023 (+)
ddx20 ddx20,LOC107556298 coding downstream 49339 9651871 ~ 9658559 (+)
cttnbp2nlb cttnbp2nl coding downstream 331760 9934292 ~ 9965096 (+)
G129849 NA non-coding upstream 104465 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 145786 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 262245 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 287744 9309503 ~ 9312451 (+)
G129707 NA non-coding upstream 465260 9119938 ~ 9134935 (+)
G129996 kcnd3 non-coding downstream 69535 9672067 ~ 9672335 (+)
G130021 NA non-coding downstream 113124 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 430818 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 483029 10085561 ~ 10147134 (+)
G130415 NA non-coding downstream 916908 10519440 ~ 10524699 (+)
cebpb LOC108265421 other upstream 128916 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1287539 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1628446 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1738625 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 2169198 7424001 ~ 7430997 (+)
LOC113532719 LOC108265185 other downstream 58283 9660815 ~ 9665693 (+)
G130390 NA other downstream 755414 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 941387 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1080546 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1104187 10706719 ~ 10741425 (+)

Expression


Co-expression Network