LOC113532719 (LOC108265185)


Basic Information

Item Value
gene id LOC113532719
gene name LOC108265185
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9660815 ~ 9665693 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153546
GCTCAGTTACTCACACTAGCGGCCATCAGCGTGGAGAGATTCCAGACCATCGCTTTCCCCTTTAGCACCGAGAAAAGGAGAGGACGCATTCGGATCTGGATCCTGATTATTTGGACCTTTGCAGTTACAGTCGCTGTGTCTTCTGTGATTCTGTCCATAGATCCTCTGTCCTACTCAACATGCCGCCACTTGGACACACCAAAGAGCTTTGCTTTGCATGCGGACTCTTTTGACGCCTGTGTTTTGATTCCCATCTGGAGCTTATGTGTCATCCTGATAGCAGTGAACTACTTGCGCATCTTCGTGGTTGTGAAACAGCATTCTAATAAGATCTATGACtcgggagtgtgtgtgctgacgcGCGTGTCGAGCTGCCGGCTGCCCCAGGCCAGTGCACTAGAGCCGGGCAGAGCTGAGGGGAAGTATCCGTGCTCGGGCCCTGAGATCGTGGGCGCTGTTTGTGTTCTCACCCCTAAAGCCAGAGCGCTGGGCAAGGCGAGGGTAGAGGGGAGGTTAGCCAGGAGGCTCGGCTACATCATCGCCGCTGTGGTCGTGTTCTGGCTGCCGCTGGTTCTGCTGCTGCCCCTCAGACTGCTGCTGAAGTGTAGCGCGTGCTGTagtTGGTTAATGTGGGAGCTGGAGACCTCGGCGATGGTATTGACGTGTGTACCTGCTGCTGTGGACCCGCTCATATACACGCTGCTCCATCGCCACTTCTGCACCGAGTTCCGCAAACTCTTCTGCACCAATCAGAGCTGCTGATAGCTGATCGACCAATCAGGAGCCGGCTCTGTGATGAAGATAGGGCCCTGTTTCATCCATATCCAGTAACATCTACTAGGATAAGAGAGTTTTAGTAGTCTGGTCTTGAAATAGAAATTTATGGTTAGAAGGCAAAGCTGCTATAGTAAATATGAGGGGAGCCCAAAACTTCCTggaattgttaaataaaatagtgtTATACGACTTACAGGATTTCTCCTTTAATCTTCTTCAAAGTACTCTCCTTGTGATGCGATACACTTGTCCTAGCGTTTCTCCCATTCCTGGAAACATTTCCTGTAGTCATCTTTTCTCATCGTGTCTAGAGCCtcctgcgtttttttttcttctggattTCTTCCACAGTGGCAACTCTTTTCCCCTTCagtctcatttttaattttgggAACAAAAAGAAATTGCAAGGAGCGAGATCTGGTGAATACGTTGGATGTGAAGCGATAACCACATTGTTTCTGGTTAAAAACTCCTTGGTTGACAAcacagtgtgtgcagatgcaagATCCAGTTCTGGGTGCACCACTCCTCTGGACGGTTTTTTTCTGATGCTTTCCCGTAGATGCCTAAGCACTTCCATGTAAAATCGCTTATGCAAACACACCAAGTGTGTACGCCACATTTGAAATCCGGGAATTTTTGGGCCCCCCTTGTATACCAGTTTTTGAATCTTTTTCACGTTTTCAATAATGGCAGATGCAAATCAAAATTCACAGATGATAGTTTCTCTCTGAGAGAGCATTCAGGGATTTGCACAAGATCACATCATTAAAACCATCTTATTTATAATACCTCCACTTGACATAGACTGGGGGCTCACCAGCTCAACTTAGAGGTGCTTCTCTGAAATTGTGCCTCATAACTaacaaatgacattttattggACGTTTTGTGGCAATTGTTTAAGTTAGCTAACTTTATTTAAGGGATAAACCTGAAATCCTGTTTAGAAACGTAGAGATTCATGTATGCTCATGTGTACAGATTCATTAGATGATTTTAAGCTATTCTGGTAAGATAAGTCACAACTCTGTAAACTCTGTAGCTCTATTAAGATTCTGTGTTTGAGACCAGAAGGTAACGAGGTCAAATCCCACACCAGCAGACGGGCCACTGTTGAGCCCTTGGATTGTGCTTCACTTGTACATGCCGTTGGATGAAAGTGCCTggtgaattaataaatataaatgcacaaaCAGCACCAAacactatttattatttgtttttt
>XM_026924266.2
AGCAACTTCTGGGCCAGTAGTGAGCTGTGTTCACTCAGGCAACTGTCTCAAACAGCAGTAATGAATTATGTGATGTAAAGCCTTGCTCTCATGCCTGTGCAATGGGAAATCCTTGGACATTGAATACATCCTCACAATGTAGACACGAGCAGTCTAGGACACGATTCGTGATTTTGAACTCTTCTCTGCTCTGTTTTACTTTTATCATCGGGACTTCGGCTAATCTGCTGGTGTGTTGGGTGGCTTTCCGGGCTAAAAGCCTGCGCACCGGCAGCAGCGCGCTGCTGGTCAGCCTGGCCGCGGGAGATCTGATCAGATGTTTTGTGGACGCTCCGGTGTCTGTGGCCTTGTTAGCGCTGAGAGAGAGGCGCGTGAGGAGCGGCTCGGTGCTGTGCCGCGTTCAGCAGCTCACATATTTACTGTGCAGCTGCGCTCAGTTACTCACACTAGCGGCCATCAGCGTGGAGAGATTCCAGACCATCGCTTTCCCCTTTAGCACCGAGAAAAGGAGAGGACGCATTCGGATCTGGATCCTGATTATTTGGACCTTTGCAGTTACAGTCGCTGTGTCTTCTGTGATTCTGTCCATAGATCCTCTGTCCTACTCAACATGCCGCCACTTGGACACACCAAAGAGCTTTGCTTTGCATGCGGACTCTTTTGACGCCTGTGTTTTGATTCCCATCTGGAGCTTATGTGTCATCCTGATAGCAGTGAACTACTTGCGCATCTTCGTGGTTGTGAAACAGCATTCTAATAAGATCTATGACtcgggagtgtgtgtgctgacgcGCGTGTCGAGCTGCCGGCTGCCCCAGGCCAGTGCACTAGAGCCGGGCAGAGCTGAGGGGAAGTATCCGTGCTCGGGCCCTGAGATCGTGGGCGCTGTTTGTGTTCTCACCCCTAAAGCCAGAGCGCTGGGCAAGGCGAGGGTAGAGGGGAGGTTAGCCAGGAGGCTCGGCTACATCATCGCCGCTGTGGTCGTGTTCTGGCTGCCGCTGGTTCTGCTGCTGCCCCTCAGACTGCTGCTGAAGTGTAGCGCGTGCTGTagtTGGTTAATGTGGGAGCTGGAGACCTCGGCGATGGTATTGACGTGTGTACCTGCTGCTGTGGACCCGCTCATATACACGCTGCTCCATCGCCACTTCTGCACCGAGTTCCGCAAACTCTTCTGCACCAATCAGAGCTGCTGATAGCTGATCGACCAATCAGGAGCCGGCTCTGTGATGAAGATAGGGCCCTGTTTCATCCATATCCAGTAACATCTACTAGGATAAGAGAGTTTTAGTAGTCTGGTCTTGAAATAGAAATTTATGGTTAGAAGGCAAAGCTGCTATAGTAAATATGAGGGGAGCCCAAAACTTCCTggaattgttaaataaaatagtgtTATACGACTTACAGGATTTCTCCTTTAATCTTCTTCAAAGTACTCTCCTTGTGATGCGATACACTTGTCCTAGCGTTTCTCCCATTCCTGGAAACATTTCCTGTAGTCATCTTTTCTCATCGTGTCTAGAGCCtcctgcgtttttttttcttctggattTCTTCCACAGTGGCAACTCTTTTCCCCTTCagtctcatttttaattttgggAACAAAAAGAAATTGCAAGGAGCGAGATCTGGTGAATACGTTGGATGTGAAGCGATAACCACATTGTTTCTGGTTAAAAACTCCTTGGTTGACAAcacagtgtgtgcagatgcaagATCCAGTTCTGGGTGCACCACTCCTCTGGACGGTTTTTTTCTGATGCTTTCCCGTAGATGCCTAAGCACTTCCATGTAAAATCGCTTATGCAAACACACCAAGTGTGTACGCCACATTTGAAATCCGGGAATTTTTGGGCCCCCCTTGTATACCAGTTTTTGAATCTTTTTCACGTTTTCAATAATGGCAGATGCAAATCAAAATTCACAGATGATAGTTTCTCTCTGAGAGAGCATTCAGGGATTTGCACAAGATCACATCATTAAAACCATCTTATTTATAATACCTCCACTTGACATAGACTGGGGGCTCACCAGCTCAACTTAGAGGTGCTTCTCTGAAATTGTGCCTCATAACTaacaaatgacattttattggACGTTTTGTGGCAATTGTTTAAGTTAGCTAACTTTATTTAAGGGATAAACCTGAAATCCTGTTTAGAAACGTAGAGATTCATGTATGCTCATGTGTACAGATTCATTAGATGATTTTAAGCTATTCTGGTAAGATAAGTCACAACTCTGTAAACTCTGTAGCTCTATTAAGATTCTGTGTTTGAGACCAGAAGGTAACGAGGTCAAATCCCACACCAGCAGACGGGCCACTGTTGAGCCCTTGGATTGTGCTTCACTTGTACATGCCGTTGGATGAAAGTGCCTggtgaattaataaatataaatgcacaaaCAGCACCAAacactatttattatttgtttttttacttgGTGTAAAATCTATGTTTAATATAATTTGATACAGACATTTAAAGCATTTCCTTGATAAAGAGAGAAGTTAATAACTTTATGCTTCTTTAACTAACCAGGAAGTGGTTGGGCTAGCTGCTTTAAAATGCAGAGGACTCTTAGTACTTTTATGCATTGAGGCTGCAGAAATATACAGAATTGTGCAAAAGCTGGAGACGTTTTCAGCGTTTTGTTTTCAATCAAATGGTCATTCAGtacttattgttaattatttgatggcaaacaataatgatgggaaaatgtacATAACAGAAAGATTATACCATAAACTGTAAAGGTATGGTACACACAGTATggaatctgtaaatattttatatgtaatagtattaattattaatattaatattggcTTGCATACACAAGTACTATATGGCTATTTGGCTGAAAATGGAatgcatgtactgtacattttcccctcatttttGTTGgccaccaaataattaactaTAAGTTTTGAATGTCCATTTGATTGAAAACAAAGGGTGGTCTCTGACTTTTGCAGTTCTGTAGGTTCTGacaattctgtgattttaagatCACAGATTTGAGCCTTCAATTCTATCAAAGCAGATATAACTTTTCAACTTTTTGTTTCATACTTTTAACTTTGTTGTAAAACTTACATGTATTCACACTCACatgtatgtaacatttataatgttaacTAATTTTTGCCAAAACgtcagatagaaccttataaaatTAAGGTCTCAACATatggagattttttttggtgaattcCATGTTCATCCCTGATTGTTTGATTACAGTTAAGAATGATATCTGAATGAAAAATTGCACACACAGCAAATGGGTTAGTGACATATATAGATCTTTTATCAGGCGTTTCACAGTAGTGACAAGACAAGATCATAAATTATATTCAGCATCTGACAGAGAAGGTCAATAGAACAAGGTGATAATTCCAtacaaactaaagaaaaaaaaaaaaaaaaaaaaaca

Function

NR:

description
PREDICTED: neuromedin-U receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153546 False 2008 lncRNA 0.46 2 9661246 9664685
XM_026924266.2 True 3447 mRNA 0.42 2 9660815 9665693

Neighbor

gene id symbol gene type direction distance location
ddx20 ddx20,LOC107556298 coding upstream 2256 9651871 ~ 9658559 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding upstream 23792 9624300 ~ 9637023 (+)
LOC117597805 LOC108265689 coding upstream 39859 9615604 ~ 9620956 (+)
LOC117597803 LOC108265688,LOC108265689 coding upstream 46120 9610793 ~ 9614695 (+)
LOC117597804 NA coding upstream 58327 9599821 ~ 9602488 (+)
cttnbp2nlb cttnbp2nl coding downstream 268599 9934292 ~ 9965096 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding downstream 347647 10013340 ~ 10031188 (+)
mov10b.2 LOC108265909 coding downstream 390536 10056229 ~ 10077521 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding downstream 502692 10168385 ~ 10279934 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding downstream 847746 10513439 ~ 10541772 (+)
G129971 NA non-coding upstream 58283 9600195 ~ 9602532 (+)
G129849 NA non-coding upstream 165085 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 206406 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 322865 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 348364 9309503 ~ 9312451 (+)
G129996 kcnd3 non-coding downstream 6374 9672067 ~ 9672335 (+)
G130021 NA non-coding downstream 49963 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 367657 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 419868 10085561 ~ 10147134 (+)
G130415 NA non-coding downstream 853747 10519440 ~ 10524699 (+)
cebpb LOC108265421 other upstream 189536 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1348159 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1689066 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1799245 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 2229818 7424001 ~ 7430997 (+)
G130390 NA other downstream 692253 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 878226 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1017385 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1041026 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 1204426 10870119 ~ 10874126 (+)

Expression


Co-expression Network