G129996 (kcnd3)


Basic Information

Item Value
gene id G129996
gene name kcnd3
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9672067 ~ 9672335 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153547
GGTTGCTGTTGTCCACACTGGATGTGTATGGCGCTGAGCTCCTGCAGGTTGTGAGCATGTGGATgtatatgtgggtgtgtgtgagggtgtgaatGCGCTGCATTAGCAGGCTGAGTGCCTTTCTTGGCTCGTCGGGAACAGCAGGACCCCATGATGCCCTCctggctggtgagggaagagCTCTGCGATGGGAAACGCTGCAGGCCGCTTTCCATATaactctgctcaaacagctGCTCATCCACGAACTCGTGGTTctacaaacagag

Function

symbol description
kcnd3 Enables voltage-gated potassium channel activity. Predicted to be involved in potassium ion export across plasma membrane. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in cell projection and membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in several cellular components, including dendritic spine; postsynaptic density; and postsynaptic membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Brugada syndrome 9 and spinocerebellar ataxia type 19/22. Orthologous to human KCND3 (potassium voltage-gated channel subfamily D member 3).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily D member 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153547 True 269 lncRNA 0.55 1 9672067 9672335

Neighbor

gene id symbol gene type direction distance location
ddx20 ddx20,LOC107556298 coding upstream 13508 9651871 ~ 9658559 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding upstream 35044 9624300 ~ 9637023 (+)
LOC117597805 LOC108265689 coding upstream 51111 9615604 ~ 9620956 (+)
LOC117597803 LOC108265688,LOC108265689 coding upstream 57372 9610793 ~ 9614695 (+)
LOC117597804 NA coding upstream 69579 9599821 ~ 9602488 (+)
cttnbp2nlb cttnbp2nl coding downstream 261957 9934292 ~ 9965096 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding downstream 341005 10013340 ~ 10031188 (+)
mov10b.2 LOC108265909 coding downstream 383894 10056229 ~ 10077521 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding downstream 496050 10168385 ~ 10279934 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding downstream 841104 10513439 ~ 10541772 (+)
G129971 NA non-coding upstream 69535 9600195 ~ 9602532 (+)
G129849 NA non-coding upstream 176337 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 217658 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 334117 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 359616 9309503 ~ 9312451 (+)
G130021 NA non-coding downstream 43321 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 361015 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 413226 10085561 ~ 10147134 (+)
G130415 NA non-coding downstream 847105 10519440 ~ 10524699 (+)
G130412 NA non-coding downstream 874644 10546979 ~ 10549067 (+)
LOC113532719 LOC108265185 other upstream 6374 9660815 ~ 9665693 (+)
cebpb LOC108265421 other upstream 200788 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1359411 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1700318 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1810497 7856004 ~ 7861570 (+)
G130390 NA other downstream 685611 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 871584 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1010743 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1034384 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 1197784 10870119 ~ 10874126 (+)

Expression


Co-expression Network