G130021


Basic Information

Item Value
gene id G130021
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9715656 ~ 9715868 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153572
TGGAAGTTCAGCTCGgacaaattaaagaacaacacgagAGACATATGTATAAATCAGAATTTGGTAGTAGTGCTTTCATATATTCAACTGATAAATAAAGACCCAGAATCAAATTCAATCAGATGTTTGTATGAGATTATGTATCCACCTCAGTCAACTCACTAAAGAAGAAAGACATGCTGCACAACATAAATGTCCTGGCATGGATTTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153572 True 213 lncRNA 0.35 1 9715656 9715868

Neighbor

gene id symbol gene type direction distance location
ddx20 ddx20,LOC107556298 coding upstream 57097 9651871 ~ 9658559 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding upstream 78633 9624300 ~ 9637023 (+)
LOC117597805 LOC108265689 coding upstream 94700 9615604 ~ 9620956 (+)
LOC117597803 LOC108265688,LOC108265689 coding upstream 100961 9610793 ~ 9614695 (+)
LOC117597804 NA coding upstream 113168 9599821 ~ 9602488 (+)
cttnbp2nlb cttnbp2nl coding downstream 218424 9934292 ~ 9965096 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding downstream 297472 10013340 ~ 10031188 (+)
mov10b.2 LOC108265909 coding downstream 340361 10056229 ~ 10077521 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding downstream 452517 10168385 ~ 10279934 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding downstream 797571 10513439 ~ 10541772 (+)
G129996 kcnd3 non-coding upstream 43321 9672067 ~ 9672335 (+)
G129971 NA non-coding upstream 113124 9600195 ~ 9602532 (+)
G129849 NA non-coding upstream 219926 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 261247 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 377706 9324708 ~ 9337950 (+)
G130231 NA non-coding downstream 317482 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 369693 10085561 ~ 10147134 (+)
G130415 NA non-coding downstream 803572 10519440 ~ 10524699 (+)
G130412 NA non-coding downstream 831111 10546979 ~ 10549067 (+)
G130459 NA non-coding downstream 1037932 10753800 ~ 10762869 (+)
LOC113532719 LOC108265185 other upstream 49963 9660815 ~ 9665693 (+)
cebpb LOC108265421 other upstream 244377 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1403000 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1743907 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1854086 7856004 ~ 7861570 (+)
G130390 NA other downstream 642078 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 828051 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 967210 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 990851 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 1154251 10870119 ~ 10874126 (+)

Expression


Co-expression Network