G130285


Basic Information

Item Value
gene id G130285
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10085561 ~ 10147134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153848
AACAAATCTTACAACACCACAAAGTAAGACACAAAAGgtttgaatgaataataaatgtattcttGATCAGGAAAAATTGGGCCACTCCAAATAAGTAAACAATACATAAAGAAGCAATGCCTGAATACAACATGGAAttaggagagagaaagaagagcctaagatttctgtacaaacacatacaaaatcAACTGGATCAATCTTTCTCCCAGACACAGGAGGATATACTGCTAGAGGAAAGGAAAGTCAGAGATGGCAGGACAGGTCTGTGTGCATACACAAAGTTTAAGAGCACAGGTGGGTTGCTTTCTCGCTTGTCAGTCTCTGTCACAGGTGCATGAAATGCAGAATACAGTACAGCGATGACGTCAGTTAACGTTGTTCCTTGAGCACTTggcagaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153848 True 439 lncRNA 0.41 2 10085561 10147134

Neighbor

gene id symbol gene type direction distance location
mov10b.2 LOC108265909 coding upstream 8040 10056229 ~ 10077521 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding upstream 54373 10013340 ~ 10031188 (+)
cttnbp2nlb cttnbp2nl coding upstream 120465 9934292 ~ 9965096 (+)
ddx20 ddx20,LOC107556298 coding upstream 427002 9651871 ~ 9658559 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding upstream 448538 9624300 ~ 9637023 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding downstream 21251 10168385 ~ 10279934 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding downstream 366305 10513439 ~ 10541772 (+)
kazna kazn coding downstream 484347 10631481 ~ 10681269 (+)
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding downstream 596591 10743725 ~ 10790914 (+)
slc5a9 slc5a9,LOC107757988 coding downstream 728276 10875410 ~ 10883004 (+)
G130231 NA non-coding upstream 51996 10033350 ~ 10033565 (+)
G130021 NA non-coding upstream 369693 9715656 ~ 9715868 (+)
G129996 kcnd3 non-coding upstream 413226 9672067 ~ 9672335 (+)
G129971 NA non-coding upstream 483029 9600195 ~ 9602532 (+)
G129849 NA non-coding upstream 589831 9450562 ~ 9495730 (+)
G130415 NA non-coding downstream 372306 10519440 ~ 10524699 (+)
G130412 NA non-coding downstream 399845 10546979 ~ 10549067 (+)
G130459 NA non-coding downstream 606666 10753800 ~ 10762869 (+)
G130492 NA non-coding downstream 715270 10862404 ~ 10862638 (+)
G130608 NA non-coding downstream 761220 10908354 ~ 10908717 (+)
LOC113532719 LOC108265185 other upstream 419868 9660815 ~ 9665693 (+)
cebpb LOC108265421 other upstream 614282 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1772905 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 2113812 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 2223991 7856004 ~ 7861570 (+)
G130390 NA other downstream 210812 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 396785 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 535944 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 559585 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 722985 10870119 ~ 10874126 (+)

Expression


Co-expression Network