G130390


Basic Information

Item Value
gene id G130390
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10357946 ~ 10358315 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153960
ggaatttttgaccattcttccaaaagcgcattggtgaggtcacacattgatgttggtcgagaaggcctggctctcagtctccgctctaattcatcccaaaggtgttctatcaggttcaggtcaggactctgtgcaggccagtcaagttcatccacaccagactctgtcatccatgtctttatggaccttgctttgtgcactggtgcacagtcatgttggaagaggaaggggcccgctccaaactgttcccacaaggttgggagcatggaattgtccaaaatgttttggtatcctgaagcattcaaagttcctttcactggaactaaggggccaagcccaactcctgaaaaacaaccccacaccataattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153960 True 370 TUCP 0.48 1 10357946 10358315

Neighbor

gene id symbol gene type direction distance location
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding upstream 78012 10168385 ~ 10279934 (+)
mov10b.2 LOC108265909 coding upstream 280425 10056229 ~ 10077521 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding upstream 326758 10013340 ~ 10031188 (+)
cttnbp2nlb cttnbp2nl coding upstream 392850 9934292 ~ 9965096 (+)
ddx20 ddx20,LOC107556298 coding upstream 699387 9651871 ~ 9658559 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding downstream 155124 10513439 ~ 10541772 (+)
kazna kazn coding downstream 273166 10631481 ~ 10681269 (+)
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding downstream 385410 10743725 ~ 10790914 (+)
slc5a9 slc5a9,LOC107757988 coding downstream 517095 10875410 ~ 10883004 (+)
gclm gclm,LOC107699464,LOC107599012,LOC107657862,LOC107757997,LOC107603255 coding downstream 525220 10883535 ~ 10894051 (+)
G130285 NA non-coding upstream 210812 10085561 ~ 10147134 (+)
G130231 NA non-coding upstream 324381 10033350 ~ 10033565 (+)
G130021 NA non-coding upstream 642078 9715656 ~ 9715868 (+)
G129996 kcnd3 non-coding upstream 685611 9672067 ~ 9672335 (+)
G129971 NA non-coding upstream 755414 9600195 ~ 9602532 (+)
G130415 NA non-coding downstream 161125 10519440 ~ 10524699 (+)
G130412 NA non-coding downstream 188664 10546979 ~ 10549067 (+)
G130459 NA non-coding downstream 395485 10753800 ~ 10762869 (+)
G130492 NA non-coding downstream 504089 10862404 ~ 10862638 (+)
G130608 NA non-coding downstream 550039 10908354 ~ 10908717 (+)
LOC113532719 LOC108265185 other upstream 692253 9660815 ~ 9665693 (+)
cebpb LOC108265421 other upstream 886667 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 2045290 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 2386197 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 2496376 7856004 ~ 7861570 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 185604 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 324763 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 348404 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 511804 10870119 ~ 10874126 (+)
LOC113530800 LOC108266038 other downstream 1263987 11622302 ~ 11633844 (+)

Expression


Co-expression Network