G130412


Basic Information

Item Value
gene id G130412
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10546979 ~ 10549067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153999
tttttctctttttgatgTTTGTCACATTTTCACAAGTAGGTGGATGTTAGAAATAACATATCCCGAATGTCTATTTCAGCAATTAAGGTGGGACTTTGGAAgtcctgtgttcatgtgggttaCCTCtgtgttctttggtttcctcccacctcccaaaacaggtacaggggcaggtctggagggtttcacaggcttagagtgttgtggtgaactgggatgtttggatgctgtcgcccccccaaccttcacgcgttcactcaggtttgtaaacggtggagtggctgactgccttatgtcccagggtgccctcatgtctgtgttggcttctggctctctcttttagttatgctgtcatagctagtcctgccggagtccctgcttgcattctgcacgcaaagtacattgtccttagccattagaggacaaaagcttacctaacaatctctccctctctctccatctctcgctctccctcactctctgtcgagctacacatgctacttctgagatgccagtgatcctgaccccttctgccccccggacctgcctgacccatcctgatgccctacttctggttggagttctcatcggttgagttcgctcgctgctgctgggggtggccccatatggacggcctgaagaaccatttggattgctggggatggtgccacctgggggctgtggagatggcttggggatcacatatggggagctgtactgtaatggcttgggactgcgattgctgtggtggctttggggctacagttgccacgagcaccttcgtactcaggattCCAttagtggacagtggatagatttttaaaaaaccagacttcttgcaaaaactgtgatgaatttactggttgcacaattgcactatttgtccatatagtacacaataatagaagggaatgatttataattgcactatccgttgcacccagatgaggatgggttcccttttgagcctggttccgctcaaggtttcttcctcatattgtctgagggagtttttccttgccaccctcgcctctggcttgctcattagggataaattcacatatttatatattaatataaatatactaatatttatataataatatttatataataaatatatattattatatttttgtgaatccaataattctgtaaagctgctttgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153999 True 1170 lncRNA 0.46 2 10546979 10549067

Neighbor

gene id symbol gene type direction distance location
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding upstream 5207 10513439 ~ 10541772 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding upstream 267045 10168385 ~ 10279934 (+)
mov10b.2 LOC108265909 coding upstream 469458 10056229 ~ 10077521 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding upstream 515791 10013340 ~ 10031188 (+)
cttnbp2nlb cttnbp2nl coding upstream 581883 9934292 ~ 9965096 (+)
kazna kazn coding downstream 82414 10631481 ~ 10681269 (+)
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding downstream 194658 10743725 ~ 10790914 (+)
slc5a9 slc5a9,LOC107757988 coding downstream 326343 10875410 ~ 10883004 (+)
gclm gclm,LOC107699464,LOC107599012,LOC107657862,LOC107757997,LOC107603255 coding downstream 334468 10883535 ~ 10894051 (+)
dnttip2 LOC102796155 coding downstream 346372 10895439 ~ 10902076 (+)
G130415 NA non-coding upstream 22280 10519440 ~ 10524699 (+)
G130285 NA non-coding upstream 399845 10085561 ~ 10147134 (+)
G130231 NA non-coding upstream 513414 10033350 ~ 10033565 (+)
G130021 NA non-coding upstream 831111 9715656 ~ 9715868 (+)
G129996 kcnd3 non-coding upstream 874644 9672067 ~ 9672335 (+)
G130459 NA non-coding downstream 204733 10753800 ~ 10762869 (+)
G130492 NA non-coding downstream 313337 10862404 ~ 10862638 (+)
G130608 NA non-coding downstream 359287 10908354 ~ 10908717 (+)
G130609 spata6 non-coding downstream 360826 10909893 ~ 10910207 (+)
G130611 NA non-coding downstream 362097 10911164 ~ 10911375 (+)
G130390 NA other upstream 188664 10357946 ~ 10358315 (+)
LOC113532719 LOC108265185 other upstream 881286 9660815 ~ 9665693 (+)
cebpb LOC108265421 other upstream 1075700 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 2234323 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 2575230 7968235 ~ 7971749 (+)
tmem51a tmem51 other downstream 134011 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 157652 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 321052 10870119 ~ 10874126 (+)
LOC113530800 LOC108266038 other downstream 1073235 11622302 ~ 11633844 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other downstream 1128444 11677511 ~ 11696791 (+)

Expression


Co-expression Network