G130618


Basic Information

Item Value
gene id G130618
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10916337 ~ 10916625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU154234
gacccctgaaaaatgaacacaataTTCTAAACTGAGTACCTGGCCACTCTTTGTGTTTCTGACTACTTAGCAACACAGCTAACGCcacgttagccagctagcatttGCTGCTGTCTGCAAACGAACACCGAAAACTGAGCAAAAGATCTCAATTAATGCCAATTCGCACATTTGTGAACTTACAGCATGAAGTTTTAGTTCTACAGTACATTTCAGAGCTTTTCGTCGTGGTTTTGAGCTTGAAGGCTTCCTGGCTGGAGTCAGTCCTCCCATCTTTAACGCAGTGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154234 True 289 lncRNA 0.44 1 10916337 10916625

Neighbor

gene id symbol gene type direction distance location
dnttip2 LOC102796155 coding upstream 14261 10895439 ~ 10902076 (+)
gclm gclm,LOC107699464,LOC107599012,LOC107657862,LOC107757997,LOC107603255 coding upstream 22286 10883535 ~ 10894051 (+)
slc5a9 slc5a9,LOC107757988 coding upstream 33333 10875410 ~ 10883004 (+)
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding upstream 125423 10743725 ~ 10790914 (+)
kazna kazn coding upstream 235068 10631481 ~ 10681269 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC103028496 coding downstream 302926 11219551 ~ 11288918 (+)
cdkn2c cdkn2c coding downstream 519760 11436385 ~ 11447884 (+)
si:ch211-198n5.11 LOC108265604 coding downstream 672199 11588824 ~ 11596613 (+)
LOC113538016 NA coding downstream 681156 11597781 ~ 11608557 (+)
magoh mgn,magoh,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding downstream 780258 11696883 ~ 11699368 (+)
G130611 NA non-coding upstream 4962 10911164 ~ 10911375 (+)
G130609 spata6 non-coding upstream 6130 10909893 ~ 10910207 (+)
G130608 NA non-coding upstream 7620 10908354 ~ 10908717 (+)
G130492 NA non-coding upstream 53699 10862404 ~ 10862638 (+)
G130459 NA non-coding upstream 153468 10753800 ~ 10762869 (+)
LOC113527270 NA non-coding downstream 28032 10944657 ~ 10948346 (+)
LOC117597850 NA non-coding downstream 438824 11355449 ~ 11359380 (+)
G130960 NA non-coding downstream 632337 11548962 ~ 11552031 (+)
G131061 NA non-coding downstream 800207 11716832 ~ 11717885 (+)
G131279 NA non-coding downstream 1300379 12217004 ~ 12217214 (+)
mrpl55 mrpl55 other upstream 42211 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 174912 10706719 ~ 10741425 (+)
tmem51a tmem51 other upstream 219506 10683078 ~ 10696831 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other upstream 352776 10543919 ~ 10563561 (+)
G130390 NA other upstream 558022 10357946 ~ 10358315 (+)
LOC113530800 LOC108266038 other downstream 705677 11622302 ~ 11633844 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other downstream 760886 11677511 ~ 11696791 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other downstream 788922 11705547 ~ 11714032 (+)
foxp3a LOC108265789 other downstream 1062561 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 1279968 12196593 ~ 12230001 (+)

Expression


Co-expression Network