G131279


Basic Information

Item Value
gene id G131279
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12217004 ~ 12217214 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU155067
GGGAGCGAGGGAGTGTTAGAAGGACAGaaggatagacagatagacagagagagaaattgcAAGAGAGATGCTTGTGGCACAGCCTGACCATTTCAAGAGACCTTTCAACAGCTTGAAAGTTGCTCAATGGGGTTTTGTGAATtatgtgtaaaatgtaattacaaaCAATCACTCAAACATTAACCAGTTAGGAAATTGCCTCCAATCCCAC

Function

NR:

description
GSK-3-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155067 True 211 lncRNA 0.42 1 12217004 12217214

Neighbor

gene id symbol gene type direction distance location
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458 coding upstream 29375 12103220 ~ 12187629 (+)
stk38a stk38,LOC108265501 coding upstream 120265 12076511 ~ 12096739 (+)
sema3ga sema3ga,LOC108265594,LOC108442245,LOC107591802,LOC107550503,LOC107731285,LOC107669661 coding upstream 183512 12010073 ~ 12033492 (+)
tspy LOC108265788 coding upstream 216234 11996043 ~ 12000770 (+)
suv39h1b suv39h1,suv39h1b,LOC108265881,LOC108442234,LOC107550505,LOC107679310,LOC107591797 coding upstream 259601 11947451 ~ 11957403 (+)
atp5pb atp5f1,LOC107668113,LOC107679218,LOC107711984,LOC107731279 coding downstream 32295 12249509 ~ 12257259 (+)
eps8l3b LOC108265744 coding downstream 40362 12257576 ~ 12274064 (+)
gnat2 gnat2,LOC108265815,LOC108442114,LOC102236489,LOC108236782,LOC107390790,LOC107591823,LOC103467179,LOC107679180,LOC106946560,LOC107731158,LOC107668040,LOC107550493 coding downstream 97690 12314904 ~ 12322876 (+)
trnad-guc_1 NA coding downstream 164785 12381999 ~ 12382070 (+)
amigo1 amigo1 coding downstream 173041 12390255 ~ 12396660 (+)
G131061 NA non-coding upstream 499119 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 664973 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 857624 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 1268658 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 1300379 10916337 ~ 10916625 (+)
G131282 NA non-coding downstream 8938 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 302680 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 472953 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 483498 12700712 ~ 12701501 (+)
G131605 NA non-coding downstream 495411 12712625 ~ 12729522 (+)
foxp3a LOC108265789 other upstream 221152 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 502972 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 520213 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 583160 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 1342878 10870119 ~ 10874126 (+)
rbm15 rbm15,LOC107731203 other downstream 382484 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1487952 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1673190 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1732723 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 2104958 14322172 ~ 14323450 (+)

Expression


Co-expression Network