G134242


Basic Information

Item Value
gene id G134242
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17016254 ~ 17016534 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158606
aaacaggatATGATTTCTCTGATCTCCAAGTCCCTTTAATGATCATTTTGCTCTTGTTTTCCTTGCAGATGGCATCCGGACTCCAAAGTTGACTGGAAGACCATTCCAACATAATGTTAAATTTTATTGCATATCCAATCTTCTTAAACGCAACACAACTGACCCCCGTTATCTGAGGAAACAACAGGGCAAAAATGATTCTCCTTCCCATAAAAAGAGCACAATTATTTCATTCAGTACATCACGCTGAAATCAGTGGGGTCGACATTACATGGTGGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158606 True 281 lncRNA 0.40 1 17016254 17016534

Neighbor

gene id symbol gene type direction distance location
cux2b cux2 coding upstream 437565 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 577170 16423733 ~ 16439084 (+)
dhx37 dhx37 coding upstream 618629 16376145 ~ 16397625 (+)
gp1bb gp1bb coding upstream 641126 16371957 ~ 16375128 (+)
sept5a sept5,LOC102226618 coding upstream 644513 16355696 ~ 16371741 (+)
LOC113524948 NA coding downstream 21287 17037821 ~ 17050280 (+)
LOC117597835 NA coding downstream 44524 17061058 ~ 17081950 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding downstream 332782 17349316 ~ 17352590 (+)
crb2b LOC108264959 coding downstream 394574 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 594852 17611386 ~ 17621646 (+)
G134241 NA non-coding upstream 198 17015751 ~ 17016056 (+)
G134238 NA non-coding upstream 24287 16991767 ~ 16991967 (+)
LOC113533561 NA non-coding upstream 41317 16951548 ~ 16974937 (+)
G134230 NA non-coding upstream 51197 16964834 ~ 16965057 (+)
LOC117597830 NA non-coding upstream 352940 16643490 ~ 16663314 (+)
G134245 NA non-coding downstream 3145 17019679 ~ 17019896 (+)
G134301 NA non-coding downstream 194418 17210952 ~ 17211186 (+)
G134303 NA non-coding downstream 216641 17233175 ~ 17233424 (+)
G134344 NA non-coding downstream 281634 17298168 ~ 17355660 (+)
LOC117597810 NA non-coding downstream 296365 17312899 ~ 17330663 (+)
gucd1 gucd1,LOC102792582 other upstream 147486 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 278270 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 394488 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 596745 16402748 ~ 16419509 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 997436 16002061 ~ 16018818 (+)
G134341 NA other downstream 279577 17296111 ~ 17296883 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 1014441 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1419651 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 2470953 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 2809264 19825798 ~ 19902367 (+)

Expression


Co-expression Network