G134245


Basic Information

Item Value
gene id G134245
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17019679 ~ 17019896 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158609
AAAAAGTTGAGCTTTCTCCAGCAGGTGGTAGTGTTTCCTCATGAAGCAGTGTCTGAACCTGAGAGGCACTGAGCTCTACACAGCTACTCtgagtaaatattaaaaaaaaaaaaaaaaagacagcttcATTGCTGTTTACTTATTTGAGAAGGCGGTAATGTGTGGAGTCATTGGGAGCCCCAGACTTGTGAAGTTTATCAGAGCTCAGCGACTTCCAG

Function

NR:

description
PREDICTED: intermediate filament family orphan 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158609 True 218 lncRNA 0.42 1 17019679 17019896

Neighbor

gene id symbol gene type direction distance location
cux2b cux2 coding upstream 440990 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 580595 16423733 ~ 16439084 (+)
dhx37 dhx37 coding upstream 622054 16376145 ~ 16397625 (+)
gp1bb gp1bb coding upstream 644551 16371957 ~ 16375128 (+)
sept5a sept5,LOC102226618 coding upstream 647938 16355696 ~ 16371741 (+)
LOC113524948 NA coding downstream 17925 17037821 ~ 17050280 (+)
LOC117597835 NA coding downstream 41162 17061058 ~ 17081950 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding downstream 329420 17349316 ~ 17352590 (+)
crb2b LOC108264959 coding downstream 391212 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 591490 17611386 ~ 17621646 (+)
G134242 NA non-coding upstream 3145 17016254 ~ 17016534 (+)
G134241 NA non-coding upstream 3623 17015751 ~ 17016056 (+)
G134238 NA non-coding upstream 27712 16991767 ~ 16991967 (+)
LOC113533561 NA non-coding upstream 44742 16951548 ~ 16974937 (+)
G134230 NA non-coding upstream 54622 16964834 ~ 16965057 (+)
G134301 NA non-coding downstream 191056 17210952 ~ 17211186 (+)
G134303 NA non-coding downstream 213279 17233175 ~ 17233424 (+)
G134344 NA non-coding downstream 278272 17298168 ~ 17355660 (+)
LOC117597810 NA non-coding downstream 293003 17312899 ~ 17330663 (+)
LOC117597877 NA non-coding downstream 356407 17376303 ~ 17378236 (+)
gucd1 gucd1,LOC102792582 other upstream 150911 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 281695 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 397913 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 600170 16402748 ~ 16419509 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 1000861 16002061 ~ 16018818 (+)
G134341 NA other downstream 276215 17296111 ~ 17296883 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 1011079 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1416289 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 2467591 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 2805902 19825798 ~ 19902367 (+)

Expression


Co-expression Network