G134344


Basic Information

Item Value
gene id G134344
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17298168 ~ 17355660 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158714
CTTCCCAAAAAAGtgctcagtgagtgtataaattgtaatcattataaaattataaatgtgaTGTATGACTTCATTAATGACATATTCCAAAGTTATCCTGTGACATCAGTAATGAACACATCTACATTTTTGTCCAAGAAATAAACCCCAGGAACAGGGAAAATATACCACAggctaaataaaatacatgaaacaCACTGgacactttaatagaaacacctgtacctcttcacattcatgcaattttccaGTCAGCCAAtgatgtggcagcagtgcaatgcataatatCCTGCAGAAACAGGTCATGGGTCATACAGGTCATACTGAATTTTCAATTGTCCAGTTTCACTGAACCTGAAGTCATAActatgccatggtcaaagtcaccaAGATCACATTcctatgtttgatgtgaacattaactgattaACATTAATTCTCGACCtctatctacatgattttatgcattgctgtGCTGCAACATGATTAACTGATTGGATATTTTGGTACACCAAAATAATTTGATTTTGTAACAtccacagcagcacacacagcaaGGATTTGTGGGATCGTAATACAAGCCATGACACTTTTACTTCAATATTGAACATAGTGGCTGAGTATAAACAGCTTGTCAGGATTCATGGTATATTCTTCATAAGCACTGAGGTAGCTGACAGATGAACAATCAAAGCCCTCAGGATCTCCAAAAGGCTGAGTTCAGCTGTCCTTTGGGTGGCTCAATCTGCTTGTTTCTTAAGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158714 True 764 lncRNA 0.37 2 17298168 17355660

Neighbor

gene id symbol gene type direction distance location
LOC117597835 NA coding upstream 216218 17061058 ~ 17081950 (+)
LOC113524948 NA coding upstream 247888 17037821 ~ 17050280 (+)
cux2b cux2 coding upstream 719479 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 859084 16423733 ~ 16439084 (+)
dhx37 dhx37 coding upstream 900543 16376145 ~ 16397625 (+)
crb2b LOC108264959 coding downstream 55448 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 255726 17611386 ~ 17621646 (+)
enkd1 NA coding downstream 550144 17905804 ~ 17916639 (+)
polb polb coding downstream 572764 17928424 ~ 17939695 (+)
plat plat coding downstream 732281 18087941 ~ 18118075 (+)
G134303 NA non-coding upstream 64744 17233175 ~ 17233424 (+)
G134301 NA non-coding upstream 86982 17210952 ~ 17211186 (+)
G134245 NA non-coding upstream 278272 17019679 ~ 17019896 (+)
G134242 NA non-coding upstream 281634 17016254 ~ 17016534 (+)
G134241 NA non-coding upstream 282112 17015751 ~ 17016056 (+)
LOC117597877 NA non-coding downstream 20643 17376303 ~ 17378236 (+)
LOC117597787 NA non-coding downstream 30604 17386264 ~ 17398372 (+)
G134466 NA non-coding downstream 255193 17610853 ~ 17611055 (+)
LOC113533142 NA non-coding downstream 343743 17699403 ~ 17714824 (+)
G134516 NA non-coding downstream 380727 17736387 ~ 17736771 (+)
G134341 NA other upstream 1285 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 429400 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 560184 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 676402 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 878659 16402748 ~ 16419509 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 675315 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1080525 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 2131827 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 2470138 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2825108 20180768 ~ 20185618 (+)

Expression


Co-expression Network