G134536


Basic Information

Item Value
gene id G134536
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17869871 ~ 17870330 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158942
CCTATTTTAAATTAGCCAGAAAGGGGAACGCAACACAAAGAAGGACGCGTGAATCCTAGATGTCAtgcaaaaggaaaaacatttatttaaagaacaaaccTAAACATAACACAAAGGAAACACgtatcaaaacaaaaacaaagaaaaaacaaatgttcCTAAAAGAACGTTCGAAAAATGAAAACCACAATCAAACCCCGGAACACCTCCAAAATATAAGGACAACGAAGATTAATcaaccaaaattaaaaaagaaaaataaggatCAAAAAACTTGTTTGCTGGTGGCTCTCCTTCCCCCTGCCATGCTCCACTTCAGCGTCCTTAATAGTTAATCAACACACATACCATGAGACGCAGCTGCACCAAGGGACCTAAACAATCAGACTTAAAGAGAAAGATTAGAAGAGACATGACGTCACATGAAGGAGAATACACACTCCAGGCATAGGCCGTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158942 True 460 lncRNA 0.38 1 17869871 17870330

Neighbor

gene id symbol gene type direction distance location
lhx2b lhx2,lhx2b coding upstream 248225 17611386 ~ 17621646 (+)
crb2b LOC108264959 coding upstream 420809 17411108 ~ 17449062 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding upstream 517281 17349316 ~ 17352590 (+)
LOC117597835 NA coding upstream 787921 17061058 ~ 17081950 (+)
LOC113524948 NA coding upstream 819591 17037821 ~ 17050280 (+)
enkd1 NA coding downstream 35474 17905804 ~ 17916639 (+)
polb polb coding downstream 58094 17928424 ~ 17939695 (+)
plat plat coding downstream 217611 18087941 ~ 18118075 (+)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC106585548 coding downstream 273717 18144047 ~ 18191595 (+)
vsig8b LOC108265910 coding downstream 333827 18204157 ~ 18215143 (+)
LOC117597839 NA non-coding upstream 8685 17857126 ~ 17861186 (+)
G134521 NA non-coding upstream 130624 17738950 ~ 17739247 (+)
G134516 NA non-coding upstream 133100 17736387 ~ 17736771 (+)
LOC113533142 NA non-coding upstream 155047 17699403 ~ 17714824 (+)
G134466 NA non-coding upstream 258816 17610853 ~ 17611055 (+)
G134540 NA non-coding downstream 6044 17876374 ~ 17876727 (+)
G134550 NA non-coding downstream 25381 17895711 ~ 17895931 (+)
G134551 NA non-coding downstream 25903 17896233 ~ 17896442 (+)
G134553 NA non-coding downstream 27058 17897388 ~ 17897599 (+)
G134557 NA non-coding downstream 31375 17901705 ~ 17901905 (+)
G134341 NA other upstream 572988 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 1001103 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 1131887 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 1248105 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 1450362 16402748 ~ 16419509 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 160645 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 565855 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 1617157 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 1955468 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2310438 20180768 ~ 20185618 (+)

Expression


Co-expression Network