G134540


Basic Information

Item Value
gene id G134540
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17876374 ~ 17876727 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158946
cTTTTTAtgtgtgaggtgtttgtggACTGTGCAGTGTTGTGTGCTATATTCTAGTGTTAAACAGGCATTTGACAAAAACAGTGGCTGGAAATAAATATCACAGCAGCCAAGCCAGCTTCTGAACAggcaaatgtgtgtgagagagagatgttcaATTAACTGTGGAACAATTAACAACATTAAGCATCATCTTGgctgaaaagtgtgtgtgtgtgtgtgtgattgcggCTAGTacgttggtgtgtgtgtgcatcactaTGTTTGATGCCTGTGGGTAGAGTGTTGAGTATGTTTTTTATGCATTGGTGCTATATGCGTGTATGCtagcatatgtgtgtttttgtgggcGTTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158946 True 354 lncRNA 0.41 1 17876374 17876727

Neighbor

gene id symbol gene type direction distance location
lhx2b lhx2,lhx2b coding upstream 254728 17611386 ~ 17621646 (+)
crb2b LOC108264959 coding upstream 427312 17411108 ~ 17449062 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding upstream 523784 17349316 ~ 17352590 (+)
LOC117597835 NA coding upstream 794424 17061058 ~ 17081950 (+)
LOC113524948 NA coding upstream 826094 17037821 ~ 17050280 (+)
enkd1 NA coding downstream 29077 17905804 ~ 17916639 (+)
polb polb coding downstream 51697 17928424 ~ 17939695 (+)
plat plat coding downstream 211214 18087941 ~ 18118075 (+)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC106585548 coding downstream 267320 18144047 ~ 18191595 (+)
vsig8b LOC108265910 coding downstream 327430 18204157 ~ 18215143 (+)
G134536 NA non-coding upstream 6044 17869871 ~ 17870330 (+)
LOC117597839 NA non-coding upstream 15188 17857126 ~ 17861186 (+)
G134521 NA non-coding upstream 137127 17738950 ~ 17739247 (+)
G134516 NA non-coding upstream 139603 17736387 ~ 17736771 (+)
LOC113533142 NA non-coding upstream 161550 17699403 ~ 17714824 (+)
G134550 NA non-coding downstream 18984 17895711 ~ 17895931 (+)
G134551 NA non-coding downstream 19506 17896233 ~ 17896442 (+)
G134553 NA non-coding downstream 20661 17897388 ~ 17897599 (+)
G134557 NA non-coding downstream 24978 17901705 ~ 17901905 (+)
G134586 NA non-coding downstream 70604 17947331 ~ 17947962 (+)
G134341 NA other upstream 579491 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 1007606 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 1138390 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 1254608 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 1456865 16402748 ~ 16419509 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 154248 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 559458 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 1610760 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 1949071 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2304041 20180768 ~ 20185618 (+)

Expression


Co-expression Network