G134550


Basic Information

Item Value
gene id G134550
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17895711 ~ 17895931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158956
AAAAAAAGGAAACGAAATtgcaaaatataaaagagaaaatgaagaaaaaattatCTGTGAAATCATAAATCTCTCTGGAAATTGCAGTTTCCAAGAaggaaaaaattaattattacaattacagtTAGATTTGGATAGAATTTATGAATATAAAGCAAAGGGTGCCTTTATTAGATTAAGGAGGATATGGTTAGAGGAAGGACAGaaaattacagaattac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158956 True 221 lncRNA 0.27 1 17895711 17895931

Neighbor

gene id symbol gene type direction distance location
lhx2b lhx2,lhx2b coding upstream 274065 17611386 ~ 17621646 (+)
crb2b LOC108264959 coding upstream 446649 17411108 ~ 17449062 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding upstream 543121 17349316 ~ 17352590 (+)
LOC117597835 NA coding upstream 813761 17061058 ~ 17081950 (+)
LOC113524948 NA coding upstream 845431 17037821 ~ 17050280 (+)
enkd1 NA coding downstream 9873 17905804 ~ 17916639 (+)
polb polb coding downstream 32493 17928424 ~ 17939695 (+)
plat plat coding downstream 192010 18087941 ~ 18118075 (+)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC106585548 coding downstream 248116 18144047 ~ 18191595 (+)
vsig8b LOC108265910 coding downstream 308226 18204157 ~ 18215143 (+)
G134540 NA non-coding upstream 18984 17876374 ~ 17876727 (+)
G134536 NA non-coding upstream 25381 17869871 ~ 17870330 (+)
LOC117597839 NA non-coding upstream 34525 17857126 ~ 17861186 (+)
G134521 NA non-coding upstream 156464 17738950 ~ 17739247 (+)
G134516 NA non-coding upstream 158940 17736387 ~ 17736771 (+)
G134551 NA non-coding downstream 302 17896233 ~ 17896442 (+)
G134553 NA non-coding downstream 1457 17897388 ~ 17897599 (+)
G134557 NA non-coding downstream 5774 17901705 ~ 17901905 (+)
G134586 NA non-coding downstream 51400 17947331 ~ 17947962 (+)
G134604 NA non-coding downstream 135994 18031925 ~ 18039306 (+)
G134341 NA other upstream 598828 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 1026943 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 1157727 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 1273945 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 1476202 16402748 ~ 16419509 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 135044 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 540254 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 1591556 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 1929867 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2284837 20180768 ~ 20185618 (+)

Expression


Co-expression Network