G135085


Basic Information

Item Value
gene id G135085
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18812490 ~ 18812710 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU159590
agaacgtTCTCTCTCCAGggggaaaggcgtacagacgcgGCATCCAGTCCTaggggagctggatgagtcagagagaaccagaggggagAGTGCAATGtctcctgagtcgcaaacagatccacctgagcttggccgaacatacgccatatctgctccaccacctcggggtggagcctccattccccgggcatcagcccctgcctcgacagggcgtctgctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159590 True 221 lncRNA 0.61 1 18812490 18812710

Neighbor

gene id symbol gene type direction distance location
vgll4l LOC108265912 coding upstream 515009 18291489 ~ 18297481 (+)
dgcr6 dgcr6,LOC108265986,LOC103029434,LOC107721026,LOC108430318,LOC107572069 coding upstream 537022 18273663 ~ 18275468 (+)
rpl6 rpl6,LOC107699672,LOC107671003 coding upstream 553766 18252746 ~ 18258724 (+)
acaa2 acaa2,LOC107671002 coding upstream 560786 18241929 ~ 18251704 (+)
vsig8b LOC108265910 coding upstream 597347 18204157 ~ 18215143 (+)
lmx1bb lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding downstream 330837 19143547 ~ 19200105 (+)
zbtb34 LOC108265239 coding downstream 433038 19245748 ~ 19264636 (+)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327,LOC107723240 coding downstream 457916 19270626 ~ 19389662 (+)
LOC113533125 LOC108265174 coding downstream 586028 19398738 ~ 19404045 (+)
LOC117595725 LOC108265174 coding downstream 606040 19418750 ~ 19419938 (+)
G135076 NA non-coding upstream 78860 18733398 ~ 18733630 (+)
LOC113533555 NA non-coding upstream 396058 18395861 ~ 18416432 (+)
LOC113533181 NA non-coding upstream 539640 18271945 ~ 18272850 (+)
LOC113533180 NA non-coding upstream 540726 18270496 ~ 18271764 (+)
G134655 NA non-coding upstream 690329 18121879 ~ 18122161 (+)
LOC113533586 NA non-coding downstream 57707 18870417 ~ 18873621 (+)
G135090 NA non-coding downstream 70658 18883368 ~ 18883781 (+)
G135101 NA non-coding downstream 136517 18949227 ~ 18955201 (+)
G135164 NA non-coding downstream 456624 19269334 ~ 19269668 (+)
G135169 NA non-coding downstream 509252 19321962 ~ 19323271 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 130558 18436185 ~ 18681932 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 763601 18030975 ~ 18048889 (+)
G134341 NA other upstream 1515607 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 1943722 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 2074506 16716133 ~ 16737984 (+)
G135287 LOC108265174 other downstream 674777 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 1013088 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 1368058 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 1409705 20222415 ~ 20442191 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 1931870 20744580 ~ 20747856 (+)

Expression


Co-expression Network