G135090


Basic Information

Item Value
gene id G135090
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18883368 ~ 18883781 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU159598
ggggggcagtcgtggcctaatggatagagagtcggccttgcaacccgaaggtgaacctgaaggttgtgggttcgggcctcgggtccggcagggattgtaggtggggggagtgaatgaccagcgcccTCTCCCACCTTCAATACCACGACtaaggtgagacccttgagcaaggcatcgaacccccaactgctccccgggcgccacagcaaaaaaaaaaaaaaggctgcccactgctccgggtttgtgttcactactgtgtgtgtgcacttggatgggttaaatgcagagcacaaattctgagtatgggtcaccatacttggccacaagtcacttcacttcaccatAAATTTACTTAATCAGTCTCATACAATTACCAGTCTCAATAGTTAATCAGTCACATACAATATCCCCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159598 True 414 lncRNA 0.51 1 18883368 18883781

Neighbor

gene id symbol gene type direction distance location
vgll4l LOC108265912 coding upstream 585887 18291489 ~ 18297481 (+)
dgcr6 dgcr6,LOC108265986,LOC103029434,LOC107721026,LOC108430318,LOC107572069 coding upstream 607900 18273663 ~ 18275468 (+)
rpl6 rpl6,LOC107699672,LOC107671003 coding upstream 624644 18252746 ~ 18258724 (+)
acaa2 acaa2,LOC107671002 coding upstream 631664 18241929 ~ 18251704 (+)
vsig8b LOC108265910 coding upstream 668225 18204157 ~ 18215143 (+)
lmx1bb lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding downstream 259766 19143547 ~ 19200105 (+)
zbtb34 LOC108265239 coding downstream 361967 19245748 ~ 19264636 (+)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327,LOC107723240 coding downstream 386845 19270626 ~ 19389662 (+)
LOC113533125 LOC108265174 coding downstream 514957 19398738 ~ 19404045 (+)
LOC117595725 LOC108265174 coding downstream 534969 19418750 ~ 19419938 (+)
LOC113533586 NA non-coding upstream 9747 18870417 ~ 18873621 (+)
G135085 NA non-coding upstream 70658 18812490 ~ 18812710 (+)
G135076 NA non-coding upstream 149738 18733398 ~ 18733630 (+)
LOC113533555 NA non-coding upstream 466936 18395861 ~ 18416432 (+)
LOC113533181 NA non-coding upstream 610518 18271945 ~ 18272850 (+)
G135101 NA non-coding downstream 65446 18949227 ~ 18955201 (+)
G135164 NA non-coding downstream 385553 19269334 ~ 19269668 (+)
G135169 NA non-coding downstream 438181 19321962 ~ 19323271 (+)
G135292 NA non-coding downstream 524773 19408554 ~ 19484934 (+)
G135294 NA non-coding downstream 548851 19432632 ~ 19516745 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 201436 18436185 ~ 18681932 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 834479 18030975 ~ 18048889 (+)
G134341 NA other upstream 1586485 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 2014600 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 2145384 16716133 ~ 16737984 (+)
G135287 LOC108265174 other downstream 603706 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 942017 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 1296987 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 1338634 20222415 ~ 20442191 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 1860799 20744580 ~ 20747856 (+)

Expression


Co-expression Network