G135294


Basic Information

Item Value
gene id G135294
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19432632 ~ 19516745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU159824
AATAtacttaaatttgatgttgcaatacagcaaaaagagaTATAATAATTGGGAGggtacactatacactgcactGTACACTGCCCTTACAGTTTATTTTCAGATCTCTAGTTTACACTGTATATAGTCCTATATATAGTCCTATATACTATAAGCAGTTATGCAGCATACTTCTGTTATCACAGACAGGCAAAGCTTGTTTTGTTGCTTCCTCGATCTGATGTTTGCATTCATTACCATGTAAGTATCAGTACCAGATTTGCCCAATTGTTTTGGATTGTAGCATAAAGGATAGTAATGTAATTTTATGCTTGTCAGTGAAACTGAATTAGAAAGCCacaatattttgaaaaacaaaatagaacAACATAAAGGTAAAGCCATAAACCCTTGTGCATTGAGCAAAATCTTTTGTAACATAAAATCATTGTATATCTATTGCACCATTAACAGTTCTTTGTTTAATCTATTTTTTAAGCGATGCAACTGTATTGCTGTCATAGTCTAATTTAACTTAAAAGGTATCAACAAACAGAGCAGAAAAAATACAACAGTGAGACATACTCGGTCAAAATATTCTACATTATTACTCATTTGGCCAAGTCCAGATTATTCGTTATTTTTGGCCATGTAAGGCAGCCGAATGTTCTGAGCATTTTTAGTACTATGTTCGTTTCTTTAACATTGCATGACAAAAAAATTTATGTAAGAAgtattgaaaaaacaaacaaacaaacaaacaaaaatgaagtcAAACAGTTTTGTCCTTGGCTATGCTAACCACCTGAGCAGTGTTTTCCCATAACTGGACATAACTCACAGTAGAAATGCATGCCTCACAACAATCTGGACAGTTTCTCCCAAAACACTGTAGTGTTAAGATCATCTGAACTGTCAGCTGCCCCCTTAGTGTTCAGGTCTCCTGAACCATTAGAGGAAACATGATCCctgatttatgattttatgatatTGGTACTTGTGAATACCTGGGTCAGGAAtcccctgaaaaaaaaagtttttagttTCAGTTGCACTGACCTGAATAAATAAAggatagatttaaaaatatatatatcttggTGCAATAATGCATTTGGGTAACTGGACTCCCAGCAGCCATGGGAGTCCCCCCCCATAATGGAGTTATGTGTACAATGTAAGGAGGATGGTGAAAAAAACCAGATATCAAATTCCTTTCGAATTCCTTTGATTGTCAAATCTGAAAGTCAACTGTTAAACTCTACTTAACAGTTAACAACTCTAATGAGCTGTTTGGAAGAGTTGCAAGAAAGAAGCCCTTTCTGAGACAATCTCACAAAATGATTTTCTGAACTTCACCAAGTGTCATTAGAACTATGACTGGCATCGTGTGGCGTTGTCAGGTGAGTCCAAAATCAAATGTTTTGGTCCTGCATACAATCAGCAACAAAAGGCGACTGCAAACAATGAAAAGCATCTGATAAATTATCTGAGCATCTGATCCAATATGGCAGTGGATCATTGATGCTTTGGGGCCCTTGTGGTATTGTGAATTCTGAAAGTACTAGGATATTTCAGCCCAACCCCTGGATGCCTCTGCCAGGACATTCAGACTTGGCCATACATgcttccaaatcaacacaggAATGGTTAAAGAAACAAAACCAATGTTTTGCAATGAACATgtcagtctctggatttgaaccctACTGAAGACCTGTGGTCTAAATTGAAGAGGTGAAGTGCACATACACAAACCCAAGAATACAAAGGAGCTTAGATGTGAACTAACATCCCTCTTAaagtgtctccaaccttgttagaTATTTCAGGGAGAGACTTAGGGCTGTTAACTTTAAGTTAAACTATTAACTTTAAAGATGCTGATCATTTTGAAACCAGAGTTTTATGGAAAAATATGCCCTACTTAAAACTTTGaatttgaggggaaaaaaaacctacaaattATCCCTGCATGTTTGAGCTCAAAATCACttattgcatgtgttattctttttatatattcatttttgctcatttccaTGAAGGGTCCATATAATAATGGAGGGCACAGTATAGGAAATCATGTCCggagagaaataataaaatagttaaTAATCATACACAATACAGGGCAAGTCTATCTGCTTACCACAATGAGTACTCTTCATCTAGTGAGCACTTCGAAGGAGCATAATACTCTTCAGTATTGTAATACACCTTCCTGTTTGGACAGCATCCAAAACAGCTCCGAAGTGTTCAGAATTGTCATGTAGTGCACACTATAAAGACAGCATTGCTGATCATGCACTGTGAAATTCAGTGTCATATCCATATCTTCTTTCAGCTTCCAGTCCTCCATGGTCATTAGTTAGTTATGAGTTTACAGAAGACAGCCTGAGCTTAACTAGTGTAAGGTGCCAGGGTTAGTTGAACCCACAGTTCGTACCAACAcaacagtgtgtatgtatgtatgagtggATAGTTTCTTTAGGGttactgaaaatattaaaaggcaatatttaaacataatgcAACTATACACACGAGAGACTCCCAACTAATCTTTCCAGCATGCCGATATACACACTAACATGGACAACCACATGGGTAAATGAATGCTGGATGCATGGAGAGGAATGAGGTATACTGCTTAAGTTTATATAAACAAATGCGGGCTACGCAGCATGACCTGGATTAAAGTAGATTACTATCCCATCTGTGTGATGTAAGTGTTCTTGATTTGTCTCATCTTCTTTTATATCGGTCTCTTCGATTATAAGAATAAACCTATATATCCTTATGAGCAGCTGTAGATGGTTCTCACATTCCTTCATAagttgtatgtgtgtaatgagtgAAGCTATTCCATTTTTATTGAAGAGTGCAATCCTATTTCTTGATCGTGTAGTGAAGATTTCCTCAGATCAACTGTCTGTAAGTCTTTTCCCTCCTCTGTGTGGTGCAAAGTTTCAGGTTCTTCCTCCGTTGTCGTGGTGGGGTAAAGTATTCTGTTCGTGCATTAGGTGTGATGTCATCAGTTAGGGCCCATTTCTAAAACAGTACACTCTGTCGACGGGACTTCCCCTgggctgtgtgtgagagagagggagagaaagaaagaaagaaagaaaaccagtTGTCACTGAATGTAACTCACGGTGGCTTCATAAAATATGTGACATTTGCCTCTCTTCAAAGTAGTGTTTTAATGTCAATAATTCAAATACTTCAAATTTATATCCTTTTTTTAGTTACAGAAATGGGAGGAGAGAAATATGAAAAtccttttaaaaagaaagaattaatcTTTCTGATAAGATTCACATTTGACTGTTCTGTTGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159824 True 3326 lncRNA 0.37 2 19432632 19516745

Neighbor

gene id symbol gene type direction distance location
LOC117595725 LOC108265174 coding upstream 12694 19418750 ~ 19419938 (+)
LOC113533125 LOC108265174 coding upstream 28587 19398738 ~ 19404045 (+)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327,LOC107723240 coding upstream 42970 19270626 ~ 19389662 (+)
zbtb34 LOC108265239 coding upstream 167996 19245748 ~ 19264636 (+)
lmx1bb lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding upstream 232527 19143547 ~ 19200105 (+)
map3k12 map3k12,LOC107715569,LOC107711606,LOC107663586 coding downstream 61257 19578002 ~ 19598056 (+)
stac3 stac3,LOC108265245,LOC108411943,LOC107751515,LOC105894341,LOC107711514 coding downstream 154676 19671421 ~ 19682627 (+)
LOC113533240 slc32a1,LOC107564828,LOC104945949,LOC107735778 coding downstream 207277 19724022 ~ 19730524 (+)
bpifcl LOC108265236 coding downstream 213878 19730623 ~ 19755646 (+)
LOC113533655 LOC108266029,LOC108434414 coding downstream 345357 19862102 ~ 19928774 (+)
G135169 NA non-coding upstream 109361 19321962 ~ 19323271 (+)
G135164 NA non-coding upstream 162964 19269334 ~ 19269668 (+)
G135101 NA non-coding upstream 477431 18949227 ~ 18955201 (+)
G135090 NA non-coding upstream 548851 18883368 ~ 18883781 (+)
LOC113533586 NA non-coding upstream 559011 18870417 ~ 18873621 (+)
G135341 NA non-coding downstream 41489 19558234 ~ 19559272 (+)
G135363 NA non-coding downstream 98130 19614875 ~ 19615657 (+)
G135352 NA non-coding downstream 102570 19619315 ~ 19627828 (+)
G135353 NA non-coding downstream 108559 19625304 ~ 19698739 (+)
G135393 NA non-coding downstream 187517 19704262 ~ 19704467 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 750700 18436185 ~ 18681932 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 1383743 18030975 ~ 18048889 (+)
G134341 NA other upstream 2135749 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 2563864 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 2694648 16716133 ~ 16737984 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 309053 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 664023 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 705670 20222415 ~ 20442191 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 1227835 20744580 ~ 20747856 (+)
LOC113533123 LOC108265628 other downstream 2264478 21781223 ~ 21797808 (+)

Expression


Co-expression Network