G135466


Basic Information

Item Value
gene id G135466
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19716637 ~ 19716979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU160018
cccaactcctgaaaaacaaccccacaccataattcctcctccaccaaatttcacactcggcacaatgcagtccgaaatgtaccgttctcctggcaacctccaaacccagactcgtccatcagattgccagatggaaagcgtgattcatcactccagagaacgcgtctccactgctctagagtccagtggcggcgtgctttacaccactgcatccgacgctttgcattgcacttggtgatgtgtggcttggatgcagctgctcggccatggaaacccattccatgaagctctctgcgtactgtacttgggctaatctgaaggtcacatgaagtttggagctctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160018 True 343 lncRNA 0.52 1 19716637 19716979

Neighbor

gene id symbol gene type direction distance location
stac3 stac3,LOC108265245,LOC108411943,LOC107751515,LOC105894341,LOC107711514 coding upstream 34010 19671421 ~ 19682627 (+)
map3k12 map3k12,LOC107715569,LOC107711606,LOC107663586 coding upstream 118581 19578002 ~ 19598056 (+)
LOC117597842 LOC108265174 coding upstream 213929 19501493 ~ 19502708 (+)
LOC113533274 LOC108265174 coding upstream 227079 19484175 ~ 19489558 (+)
LOC117595725 LOC108265174 coding upstream 296699 19418750 ~ 19419938 (+)
LOC113533240 slc32a1,LOC107564828,LOC104945949,LOC107735778 coding downstream 7043 19724022 ~ 19730524 (+)
bpifcl LOC108265236 coding downstream 13644 19730623 ~ 19755646 (+)
LOC113533655 LOC108266029,LOC108434414 coding downstream 145123 19862102 ~ 19928774 (+)
LOC113533168 LOC108265115 coding downstream 214400 19931379 ~ 19939003 (+)
bsna bsn,LOC108265177 coding downstream 334130 20051109 ~ 20171369 (+)
G135393 NA non-coding upstream 12170 19704262 ~ 19704467 (+)
G135353 NA non-coding upstream 17898 19625304 ~ 19698739 (+)
G135352 NA non-coding upstream 88809 19619315 ~ 19627828 (+)
G135363 NA non-coding upstream 100980 19614875 ~ 19615657 (+)
G135341 NA non-coding upstream 157365 19558234 ~ 19559272 (+)
G135524 NA non-coding downstream 288140 20005119 ~ 20005708 (+)
G135641 NA non-coding downstream 295588 20012567 ~ 20012767 (+)
G135643 LOC107737118 non-coding downstream 297543 20014522 ~ 20014770 (+)
G136057 NA non-coding downstream 1220144 20937123 ~ 20939070 (+)
G136056 NA non-coding downstream 1230325 20947304 ~ 20965468 (+)
G135287 LOC108265174 other upstream 213994 19487487 ~ 19502643 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 1034705 18436185 ~ 18681932 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 1667748 18030975 ~ 18048889 (+)
G134341 NA other upstream 2419754 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 2847869 16859976 ~ 16868768 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 108819 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 463789 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 505436 20222415 ~ 20442191 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 1027601 20744580 ~ 20747856 (+)
LOC113533123 LOC108265628 other downstream 2064244 21781223 ~ 21797808 (+)

Expression


Co-expression Network