G135524


Basic Information

Item Value
gene id G135524
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20005119 ~ 20005708 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU160085
TCCAGCTCCTGATAAatacctctttctctctttctgccctCTAAATGAATCTCCTGTAGATGCTGACTATGTTCAGCTTCTGGTTCTGTCACAGTTTCCTACCTTTGTCTGTCCTGATAATTGTCCCTACACTTGCTTCCTATATTTTTCTCTAAGGCATCTCGTTTGAAGAgagtgctctctgtgtgtgtgtgtgtgtgtgtatatatgtgtgtgtgtgtgtgttcttgtgttcTGAGCCAGTCAGTGTGAATTACAGCCTCACAAACCAGGAAACAGGACTACAGCCGCCTTACATAATCCCGCACGCTGGTGCCGGGGCCTGTCTAGGGGGATTAACGACTAAAACGCCATCACCCCACACTTCCCCTCGCCCTTTCGTAACACTTCCCACAgcagagggaggagggaggagggtaAGACGAGAAAAAGGAGTAATTGTGTCTTgtatgtgtgtcagtcacagtatTAAAGTAGTATTAGCTAAGTGTCCTCTGGAGTTTTAAATTTGGAGATTGTATCAGGGTGGCAGTAGTACGTCTTCTTACATTCTTTATTCTACATTTTCAACCAAATTACTCACAGCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160085 True 590 lncRNA 0.45 1 20005119 20005708

Neighbor

gene id symbol gene type direction distance location
LOC113533168 LOC108265115 coding upstream 66116 19931379 ~ 19939003 (+)
LOC113533655 LOC108266029,LOC108434414 coding upstream 76345 19862102 ~ 19928774 (+)
bpifcl LOC108265236 coding upstream 249473 19730623 ~ 19755646 (+)
LOC113533240 slc32a1,LOC107564828,LOC104945949,LOC107735778 coding upstream 274595 19724022 ~ 19730524 (+)
stac3 stac3,LOC108265245,LOC108411943,LOC107751515,LOC105894341,LOC107711514 coding upstream 322492 19671421 ~ 19682627 (+)
bsna bsn,LOC108265177 coding downstream 45401 20051109 ~ 20171369 (+)
LOC113533362 apeh coding downstream 183092 20188800 ~ 20209345 (+)
tlr9 LOC108265704 coding downstream 204048 20209756 ~ 20215905 (+)
wnt5a wnt5a,LOC108411772,LOC107553896,LOC107693599,LOC107750813 coding downstream 449596 20455304 ~ 20467426 (+)
LOC113533338 lrtm1 coding downstream 541597 20547305 ~ 20560196 (+)
G135466 NA non-coding upstream 288140 19716637 ~ 19716979 (+)
G135393 NA non-coding upstream 300652 19704262 ~ 19704467 (+)
G135353 NA non-coding upstream 306380 19625304 ~ 19698739 (+)
G135352 NA non-coding upstream 377291 19619315 ~ 19627828 (+)
G135363 NA non-coding upstream 389462 19614875 ~ 19615657 (+)
G135641 NA non-coding downstream 6859 20012567 ~ 20012767 (+)
G135643 LOC107737118 non-coding downstream 8814 20014522 ~ 20014770 (+)
G136057 NA non-coding downstream 931415 20937123 ~ 20939070 (+)
G136056 NA non-coding downstream 941596 20947304 ~ 20965468 (+)
G136429 NA non-coding downstream 1341137 21346845 ~ 21347161 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 102752 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 502476 19487487 ~ 19502643 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 1323187 18436185 ~ 18681932 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 1956230 18030975 ~ 18048889 (+)
G134341 NA other upstream 2708236 17296111 ~ 17296883 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 175060 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 216707 20222415 ~ 20442191 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 738872 20744580 ~ 20747856 (+)
LOC113533123 LOC108265628 other downstream 1775515 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 1819974 21825682 ~ 21859668 (+)

Expression


Co-expression Network