G136056


Basic Information

Item Value
gene id G136056
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20947304 ~ 20965468 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU160650
tgtggttttctttaatatcattgaaatgttaaaaatcttTCTAATCCTGCAAACAAGTAACGAATAATGCtaagtgtgtgatgtaaagaaAGCTTCAGGTTTTAACATAAACTGTACATTTAGAATTTGTAGCACTTCAGTTTACTCCTTCCAAGGTCCGTTAGTACAGCGATGCTCTAATGAAGTCTTGCATGCAATAACTAATAACTTTCTCTTGTTAAATATTGCCAATATATGTTAGCTTCGGCATTAACATATACTGGCATTTAAAGCCACATAATCAACATATTGCTAAAGGAGAACAAAGTGGAGATAACTATTGTGTTGATCTATTACTTTTAAATACGCAGATGTCTCACACGCATACTTTATATAATGCCTACACAAATTACAGGCCAATTATGTATATATGCCAAGTATTCTCTATGGCACTCTGGACAAGTTACGCTGTGTGTAGACTCACTCTGATCTGGTTCTTCAGCTGCTCAGCCTCCTGACGTAGCTGGTCGAGTTCGCTCATTTTCCTCTTCTAAATGGTATGCTTCACTCCTGCCTCGCGCTGGGTCACTTACTGATCTGTTTCAGTCGTGGGAATCCGTTGTTTATATCGCATTGACTGGAAACAGCAAAGATAAAGAGTTCCCCCTTTCTCTCCGTCGAGCTAACGAGCTTTACCGAGGAGCGCCACTCCCCGCACCCAGCTTTCGATACGCCAAACCGggggaacacacacaccgacacaccgGCACACCACGGGCGCGAAGACAGCGGCacgtttctctcacacactcacacacacatacacacactctcactcactcacacacacaaaacaattcaattcagcTGCTGAAACAACGCGTCTTTTTCTGACGGTGACTCAAATCAAAGTTGTTTACTCCGGCCCCTATCCAAACGcagcctctctttctgtcccgctgtcgttctctttctctctctctctctctcctgctctttctttctttctctctctctctctctttctttctttctttctttctcctcgcCGCGGTCTCTCAGGCGCTTCCTCCGGCCATCAAACGGCAGAGATGGGCGCG
>TU160651
GCTTAACCTCAAATTATGAACTGATGCTGTTTAACAGTATGTGTGGTGCGAAGGATCTCCCTCTGCTAACCGCACTTTTGCTCTGTGCTTGAAACACTATTTTTAGCTTCATAACAGCACAGCTTGGGGTCATATAGTATTGGGCTATAAATGGAACGGGTATAGCTAATTTTTTAGTTGGGGTTAACAATGGGGAAAACGTCTAGCATTTATGGTCAGACAACAACATTGTGCTCCCAGAGTCCTGACTGATCAGCACTACATGCCTCCAACACATGATATCAGAGCATTCTAAATGAAAccatgtttctgttttatttaacttaCAAAGAGCTTAACTGAGGAAATCGAAGTTTAATTCTGAAATCGTAACAACCCCTAGTCCTTGTTTCTGACACAACAAGTGAGAACAAGCTCACACAGATTAATAAGTCCATGTCCAATTTTGAGGAACCAGGACAGCTCAGTGCTAAGTGGGCTATTGGAGCAAACCAAAAATGGacagcgtgtgtgtgggtgtgtgtagacTTTCCGTGAATGGTGCATGAGATGGTGGTTAAACTTACCAAACCTTACCAATAGCTACAAGATGCAGGCCTTGAATCACTGAAGCAGGGGTAAATCAAACACGAGGCATTATCTGAAGAGATGCAGTGTCCTGCATCCTCTGGGCACAATACTGACCAGCCATTAATCGATTCCTCTTTCTTCATCTACTTTCTCCCATTAAATGAGATTTAAAGAACTGTTGCCATTTTGAAAGACATAAACGCTTTCTGAAGAAGGTAATTGTGCAACGTAGAACCAACACCACCCTCTAAACCTGAAGCACACAGACCCTCAGAATCTGGCCACACTGTCAAAACTGTCCATTTTATATCTACATTTAACATGCAGCATCTGcctttaaaaaatgaagaggGAAGAAAATCACTGGTTTCAGGGCTTGTGGGCTACATTTATggatatcatattatattattttagctAGTGTGAGTGGTTTAGTGGATTTGTTCACTTCTGGAACGTGATTGTAAAACTGTCCGCCAGTGAACAACGATTTCTCTGaataattaaagagaaaatagCTTTTACCTTTTAAACTTATCCTCAGTAACATCTCTACCATACAATAAACTGTATTAAATAGAaagcattcatttgtttgtgcCCCTCCCTTTCAAATACATATCCAGTAATTCAGGCTGTAGGTTAAAGGCATATCAAAAGACCTTGGGAGGGGCAGCCCGTGCAATTCATCCTCTTCCAAATATAAACAGGGTCATTTTTAAGTGTAAGACTTCATTTACCAACTGAACTTTTGACATGGAAATTATTAATAGACCTTAATATCTAAGGAGTAAGTTGGGAGCAAGTGCCACAGCGGGTTTATTTAGGTCACATGCAGCACGGTAAGAGAAGATGGCAATGAGATGACAAGCTTTTGACTGATCACTGACAAAGATTTCAAAGAAACCAATGGATTGCCATTTCCATATAAAGCACAATTAAAAAAGGAAGATATTTCACACTATGTCGAAAAAGAGCTATAGGTGGATTATTTGCATGTGATCTCAGTACAACCCTTTACATGATACCAAAACCTATTAAAAgtccaaaaatatgaaaatacataAAGAAATGTCCTGTTCTTCTGTAAGGTTTGTCTAGACTACACTTGATTGCTAACACAATGCATTAACTGGTGTCTCTTGTAGAGAGTTTGGCTAAGCCGCCTATAGGTGTGCTTGCCTTGCTGCTAAACAAGAGTTTGAGCGTAAAGAGTGAACTCACTAGTCATTCCACTGCCCTTGTGTTGATGCCTCCAGCTAAACTGGTTCCTCTGGATAACGCTTGTGTTGTCTGTACCCTGGCCCTGAGACACTCACTTAAAATGCCAACACTACcaaagattaaaaatgttaaagacTCTTCCAGATGCAGCACGTCTACCATCGGGAAAGTGCAGATCATGTttcacagtaaataaatacaggaTCCTACTAGAACCTTCTTGGttctagcacacacacacaaaaaaatacttGTCCTTGTATCCTACATTTAgcttctttaataaaaaaggaattCACGAAAAAGCAAAGCTCAAGCCAGACAAGTTCATCTGtaactgcacaaacacactaacTCCCTCCACACAGCACCAAACGTTTTAGAGGCGCAACTGAGCAAAACTGTCGCATGACTCAAAGCTCATcgttttatttacacacaaggATAGTCTCATTTTGGACTTGGTTCTTCTGCTTCTAAACTAAGGGAAGCAAAAtaacagtggggaaaaaaacttggcaacatgcatgtgtatttttctttctgccaCTCAGGCCCATGAATGTAAACACAAAGCCAAGCCTTTATTCAAAAACTCCTGTGGCAGTCGCATGCAAAAACTGCAACAGGTTTACACCATGGTATGCAAAATCCTCTCCCCCTGCCATAACGTTTGGTTATTCAAAACCGTACCGTAGCGTGCACCCGCTGACCGGTAACAGAGGAAAAGTGAGGACAGTTTTATGCAAACCACTCCGTGAATGGCAAAGACGCAATTTACAGATTGCTTAGAAGGGCTTTCTCACAACTTTTACTACTCTAAAGGTAAATGGAAGATAGAAGAAAAGTGTtgattgaaaaaagaaaaaaaaatcacattaaaagtcTAAGAACTGTAAAAGCCTCTACTTTTATTTGGCGGCTCTATTTAATGGAAGAAATAGGCTAATATATAACCGTATGAACTCTGCTTCATTTTCAAATTCTAAATTTCCTTAAAGTCCAGTTTAATTTTCTCATTCTGGTTAAGCACTGGACATGGCGCTGAACAAGCTGAAACAATAAACACTGCATTGCTTCCTGACTGGATGTATATGTTATAGATGTTAATGCTTGACTGTATTGATAATGacttgaaaatgttttgtatttgtgtgaaGATAGTTCATTTCTAAGATACAGTTATGCTGTCTTGAATGGTTGTACTATCATCAGCATTTTGGACTTGAGATCACTTTGGCTACTAATCGGCTAGAAGGCTCTGGGCTACTAATCTGAAGGTTGTGTGCTCAAATCCCAGTATAAAGTAGCTACAGTGTTGGGTGCCTGTGGAAGACCCTTACGTCTCAACTGCGCAATTATATCCTGTCTCAGTTTTGTGAAAAAGTTTTaatcaaatgagcaaatgtaacTGCAAATGTAAGCTAAAACTACCGGTTTCTGCTTAATAAGTCAAACAAGTTAGCTCAACCAACACAGTTAGAATTTTATTGTTGGTATGGTTGACCATTTTCATATCAGTCGTCAGTTAGTACTAGTGCTAACTAACCAAACTCTGCTAATAAATGGTATGGCTGTAACTGAGCAAGCTAAACTAATACAGATTAATAATGCTAACTGAACAGGCTACAGTGTATACTTCATCTATTAGGGGAACATGAACTATAGACCAGCCTGAGACTAGATACTCTGCACTGATACGTTGATTAAAGCGGTAAACTCCACCTCGTCATTCTGTGCTGGTGCTGTCGCGTATGTTAGAGAATTGTTGGATATTTGGCACTTTGAAATCTTTCAGTGCCTTGTTTTAAATACACTCATTCAGACGACGACATGATTTTCCATGAAATTTCCAGAGATGTAGTGACAAAATCAGgcactaataatttttttttttatctcatcaGTAAAGAATCAAAGTCCACTACCATACAAGTGcagaaaagtattttaaaacaaCTACCCAGAGTGTTGcaattaaaatcaaataaaaacccaaaaatagTACAAACTAAACTACAACTGTGCTTGTATGGAGAGACTCTATTTACATCAGGTTGGACATGATTGCTAAATTAAGTCTATTACAATTCACAAGATACAGCCTTCTCAAATTAACACTATAGGCCTTTAAGCTCAGAAGATGATCAACTAAAGCTGTTCTTTCCCCCTTCCATAACTTCTACATTTCTAGATTTGTTAGCCAATCTCTATTTTTAGACCTGATAATCTATCACCACCTCTGCTTGTTTACTTAAACACCTGGCTACATTCCTAATACATAGATACATATGGACCACTGGGGAGAAGAGAGAAGATGGAAGCAAAGGCTTGAAAAAAATAGTTAACAGGAAACACATGCACAAGCAAAAAGAACTTCCTGCTACAGGATTTTTACTGGGCGTTGTACAAGAGGTCTACTGGGGCCATTTTTGTTGCTCAGGAACTGGTCATTTTTCTACACTTTGCTTGAAGCAAGGCAACATGAAGAGTAAAACCTTTAGATTCGAGTCTGCATCTTGCctaaaacatctttaaaacatCAAATTTGATATCTTCAAACTGGATTTAGGCAATGAAAGAAGTATATTACCAAGTCCAAGACAcatgatgtctctctctctctctcacacacacacaagcatcagGTCTACAAGCATCAGGCCCAGTCCTAAGGTTTGGTGACTTCCTTACTCAAAGACACCGGGTTCAACTTACCAGTTCATTACCATTACCAGGTTTATTTGGTGTTTTAGAGCAGCACAGATCATCTGCACAGGATTCCAGTCATAACCTGAAACAACATCCCCTGACAACAAGAACAGCCATTTAACTCAACACAAACTGTATATATTACCAGGTAAGTTCAATGGTGCCAACAGGTGCGTTTTGCACGTTGCATTATTACAAATGCTACATTCTAGCTAACACATGTTTAACCggctttacactgtatgatGTCTGGCCCCATTTTGCTTTCACAGACAAAAATCTCAcatcgtaaaagaattctttgttCGTGAGTTGCAATCGGTGCTGGGACATGCTCACCAGCAGACGATTACATGCCACTGCAACTAAACACATCCTAGTATTAGCCAAGAGACACAAGTAGTTCTGCCAATGTCAgaaatctttttattaaaatcttggAGTGTCAGCTGCTACAAGgctcatctaaaagccaccaacagGAGAAAGACAAGTATACGCAAAAATcacgggacagctacaaatcGGTAGTGGCAACGACAAAACGTAGATGAAATATTTGAATGGACAGAAATAATATCCTTAGTACCTTCAAGCTCATGTTGAAGGTTGCTTTTAATATTCGATAAACTGACATTCTGTTACAGAATGCAGTGAACTTTTTACTCGTATCATCTTGTACACAGTGATGTAGTTATCTTACAAGACTGCTGAAAGCACGGGCTAAACCTGGCTTTGacgagaagaaaaaaaaaaaatcacatttcagaCACTCGAAAGACACAAACCTGACTTTCCTTCGGAACCATAATATTAGCTAGATACTTCTACTTGGATAGAGTTCCTTAATGAAATCCCACACACAGTAAGAGTGGTACAGAGTTTCATTCAGAAATTGTCTAAAATTACTACTAAATGGGCTTGTAACCTAGAGTGAAAGTCATTTGTGGGAATGAGAGAACgtctgaggagaaaaaaaaaaaaacattcaaacgACTCAAATCAGCTGCATCAATGACCAAGCCCATAATCCTAAAAGCTGAGGTCCAACGACAGCAAGAATTTAATCCTATTCGGGATTGCAGGCAGAAAATGGAGTGGGATAAacccagagagagagtgtgtgtgtgtgtgtgtgagagagagagagagaaacattaaAAACTAATGTCCACTATGTTACATGGGCTGGATAATTCCGAGCTGGTCATATGCTTCTCTCTTAAAGCTGATTTAACATCTGGAAGCACAACAGAGGAACACATAGGTTATGACACTGGTACCAGCCTTTAAGAAAGATGATGCCTTTATGCAAACTATATAGAATTGTCAAGTGAAGCATTATTTTAAGGCATGGATGTTTAAAAACGGGTGGCATGGCGCTGCACATTCTCaatacagatgtgtgtgagactgagcAAACAATGTCTTGTCTAAACGTGTGCAGAACCCAAGTCATGTGTGACTTCGCCTACATGGCGCATAGAAAGAAAAATTTGGAAATGTGTCAGTTGAAGAACAATGTACAAAATAGGCACTGTTATAACTGTGATTAAGTTCTACCGAAatatgtaggaaaaaaaaaaaaaaacagatagctAGTGCTTGTGTAAGGCAGCACAGATTCCTTAAAAACTCCTCACAGCTGTGCTAGACATCTGCATGATCTGACTTTTGACTCCACAGTCACTGTTTTATctacatgaaaacatttatgtTGGTATAAGTGAAAGCCCCAATAGTTATTCCACTCCTCCATGTTGTCCTAAATCTGCTGCCATTAAACACAGGCTCGATCGCTTTGGGCTTAGCGCGGGGGGGGGGAGGGGgggtaagaaaagaaaagaaaaaaaagaaagaaatgccaTTTCCCACCACACCGGAAGCTAGGAGGAACATTATTGGAATATGGCTTTTGCACGTAACCACAGTGCCCAATGCTAATGTGCTGCTTGGTCGGAGGCAGGAAAGCGGCggagggagaagaagaagaagaagaaggaaaaaaaaaagcgctgCAAACGCCATCTTGTTGGCTGCAGCTGCTTCAGGTTGAGAATACAGCGAGCCATTCATTGTGCGCCGGGGATCCATTCAGCACTGTGAGCCAGCGCTTGAGAGATTTCGACAAGGTTTTACGGTGGTGTGGATGAAAATTGCAAAATGgctggctttatttatttattttttttaatcgaagagaagtgtgtgtgtgtgtgtgtgtgtggagcgcTTCAGTACTACACCAGCCTCCTCTCTCACGCGCTCTACAGACACTGCAGTGACAAACCGGTTCAATCCAACACATCTTCCCTTTCTCCCAGTTTCTCACCCCGACCATTTCTAGAAAGCTCGGTTTGTCAAATGCCTCTCCGTTTCGGCTCGCTAAGATCGACAGCTTCCTTGTTGCAAAGAAAGCCGCCCTGTTTCCTCTATACCAccgcctcctcctccaccaccacgGCCGAGATTTGCAGCCGggttaaacagagagagagagagagagagagagagagaagagagagagagggatcaCCCAAAAGCCAATTAACTCATTTCCAGCTCGTTAAAAGTGGAGGATCAGTTTGAAGATCCGatcaaaaagagagagagagagagaaagcatacGTTAGACCTGAACTGAAGTTGTTCAGATGGGAAATGGCTGAGAGGAGGAGCGACATCAAGCTGTCACTCACatcatccaacacacacacacagcattttatttctcatcATTTCTCATAATCCTCCATGCACTGAAGCTAAAAGCATCTGtcccaaaaaaaaagtggctaACCCAAGCTGTAACTGCACcaaccatgacacacacaccctcatctcatcttatctgtgtgtgtgtgctgtttacTCAACACATGACTTACATGATTATAAAATCTATTCAGATCAAATGGACAGCATTAAAGCAGAAATATCTGCAACTGCACCTTAAGATTTCAGAAGCTACTGGTTAACAGGATCCCCCCCCCTTCCTCCCCtcacaaaaaaatcatcacacacacgccCTGATTTCAATCTATTCGAGAAATCCAGTGATCCCAGGCTCCATACTGGAAATAAGCAGCACAGGATCAGAGGGAGAATCATGTGGAGGTGGGTGGTGATGGGACTGGGCTTCATCCTTCCTGCACACAAGGAGCCATTTCCAGGGTTTATAGCCAATGCATCTATGCCAAACCCTTGATTTGTTACCATCCCCATACACGAGTTAAAATTTTAGCTAAAAGAttgcctatgtgtgtgagagagagagagagagagagaggatggagtCAGAGTGTAGTTATAGCTGTGAATAGCTCAGCAACTTGGTTCCAAGATGGATCTCTATCCGCACCGGAACACTTCAAATGGAGGACGCAGGTTTCAGCAGAAAAACACTGCctggcaagtgtgtgtgtgtgtgtgcgttcagTATGAAAAACAAGGTCACCACCGCTACAAGGAATTTTAATAATACCaccacacaaaacaaaaaaacaagaataaggCACAGGGATTATGCAAAGCGTTTGTGAATGAAGAGAGGACTATTAGCTTGCTGGCTAACTAACACAGGAGGTGCTGTGAACCCGACAAGCTCGAATGCTAAACATTTTCTGGCACATAACCGTGATTTTTTACAAAGCTCTGCCATTCTCCAGGCTAGTCCTACAGGAATACCAAATAACTCTTCAACATGGAAACCAGATATCCGTATAAATGAAACTATTTACGAGCTATTGAATGAAATCTGGCTAATTAGCGGTGTGTTTACTCAGTTTACTAGCAGCTTCCCCCACCCCCGTCATACAAGCAGGGAAGTCAATCAACCCAATTAGCCGACTAGCTAGCTCTCTGCAGCTAAGCCGGAACAAAATCGAAATAATATTTGGAGAAAAGTCAAGGGAAACATTCAAAATTGTGCCCTTACCCGTTTTCAGTCGTGGGAATCCGTTGTTTATATCGCATTGACTGGAAACAGCAAAGATAAAGAGTTCCCCCTTTCTCTCCGTCGAGCTAACGAGCTTTACCGAGGAGCGCCACTCCCCGCACCCAGCTTTCGATACGCCAAACCGggggaacacacacaccgacacaccgGCACACCACGGGCGCGAAGACAGCGGCacgtttctctcacacactcacacacacatacacacactctcactcactcacacacacaaaacaattcaattcagcTGCTGAAACAACGCGTCTTTTTCTGACGGTGACTCAAATCAAAGTTGTTTACTCCGGCCCCTATCCAAACGcagcctctctttctgtcccgctgtcgttctctttctctctctctctctctcctgctctttctttctttctctctctctctctctttctttctttctttctttctcctcgcCGCGGTCTCTCAGGCGCTTCCTCCGGCCATCAAACGGCAGAGATGGGCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160650 False 1079 lncRNA 0.44 2 20947304 20965468
TU160651 True 8947 lncRNA 0.41 3 20956374 20965468

Neighbor

gene id symbol gene type direction distance location
tkta tkt,LOC106571977 coding upstream 13616 20916823 ~ 20933688 (+)
dcp1a dcp1a coding upstream 37555 20898476 ~ 20909749 (+)
chdh chdh coding upstream 163236 20769050 ~ 20784068 (+)
actr8 actr8 coding upstream 189723 20748979 ~ 20757581 (+)
LOC113533337 LOC108265089,LOC108443054,LOC108263931 coding upstream 208070 20736260 ~ 20739234 (+)
gabrd gabrd,LOC107690714,LOC107711789,LOC107739653,LOC107684467 coding downstream 68996 21034464 ~ 21060300 (+)
LOC113533118 LOC108265572 coding downstream 110359 21075827 ~ 21185924 (+)
LOC113533151 NA coding downstream 258166 21223634 ~ 21250625 (+)
prickle2a prickle2a,LOC108265757,LOC108412058,LOC107704215,LOC107570338,LOC107708258,LOC107744819 coding downstream 311219 21276687 ~ 21314172 (+)
LOC113533443 LOC108265758 coding downstream 372958 21338426 ~ 21355283 (+)
G136057 NA non-coding upstream 8234 20937123 ~ 20939070 (+)
G135643 LOC107737118 non-coding upstream 932534 20014522 ~ 20014770 (+)
G135641 NA non-coding upstream 934537 20012567 ~ 20012767 (+)
G135524 NA non-coding upstream 941596 20005119 ~ 20005708 (+)
G135466 NA non-coding upstream 1230325 19716637 ~ 19716979 (+)
G136429 NA non-coding downstream 381377 21346845 ~ 21347161 (+)
G136433 NA non-coding downstream 395371 21360839 ~ 21361880 (+)
G136466 NA non-coding downstream 709390 21674858 ~ 21693702 (+)
G136532 NA non-coding downstream 859521 21824989 ~ 21825322 (+)
G136544 NA non-coding downstream 874164 21839632 ~ 21839852 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 199448 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 505113 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 761686 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 1044937 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 1444661 19487487 ~ 19502643 (+)
LOC113533123 LOC108265628 other downstream 815755 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 860214 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 1127127 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 1542158 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 1629066 22594534 ~ 22636989 (+)

Expression


Co-expression Network