G136429


Basic Information

Item Value
gene id G136429
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21346845 ~ 21347161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU161105
attatCTTCAAGCACTCTTTGATATGATGCAGAATTCATAGTTGAATCAATGAATGCAAGCTGTCCAGTCCCTGAGGCAGCGAAGCAGCCCCAAGCCATAACATttccaccaccgtgcttcacaaTTGGTATGAGGTGCTTCTCCTGAAAACCTGTCTTTGGTCTGCGCCAAACATGTCTGCTGTTACTGTGGCCAAACAACTCTGTCTTTGATTCGTCTGTCCAGATCATTCCAAAAGGCCTGGTCTTTGTCTATATGCTCACTGGCAAACTGTAGTCTTGCTCTAATGTTCTTTTTAGACAGGAAAGGCTTTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161105 True 317 lncRNA 0.44 1 21346845 21347161

Neighbor

gene id symbol gene type direction distance location
prickle2a prickle2a,LOC108265757,LOC108412058,LOC107704215,LOC107570338,LOC107708258,LOC107744819 coding upstream 32673 21276687 ~ 21314172 (+)
LOC113533151 NA coding upstream 96220 21223634 ~ 21250625 (+)
LOC113533118 LOC108265572 coding upstream 160921 21075827 ~ 21185924 (+)
gabrd gabrd,LOC107690714,LOC107711789,LOC107739653,LOC107684467 coding upstream 286545 21034464 ~ 21060300 (+)
tkta tkt,LOC106571977 coding upstream 413157 20916823 ~ 20933688 (+)
nadka nadk coding downstream 21645 21368806 ~ 21394676 (+)
LOC113533389 slc35e2b,s35e2,LOC108265386 coding downstream 69731 21416892 ~ 21435953 (+)
cdk11b LOC107575169,LOC107718258,LOC108265382 coding downstream 91089 21438250 ~ 21456723 (+)
ubiad1 ubiad1,LOC107718257,LOC107572294 coding downstream 134220 21481381 ~ 21484957 (+)
mib2 mib2 coding downstream 142223 21489384 ~ 21562570 (+)
G136056 NA non-coding upstream 381377 20947304 ~ 20965468 (+)
G136057 NA non-coding upstream 407775 20937123 ~ 20939070 (+)
G135643 LOC107737118 non-coding upstream 1332075 20014522 ~ 20014770 (+)
G135641 NA non-coding upstream 1334078 20012567 ~ 20012767 (+)
G135524 NA non-coding upstream 1341137 20005119 ~ 20005708 (+)
G136433 NA non-coding downstream 13678 21360839 ~ 21361880 (+)
G136466 NA non-coding downstream 327697 21674858 ~ 21693702 (+)
G136532 NA non-coding downstream 477828 21824989 ~ 21825322 (+)
G136544 NA non-coding downstream 492471 21839632 ~ 21839852 (+)
G137017 NA non-coding downstream 801462 22148623 ~ 22149777 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 598989 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 904654 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 1161227 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 1444478 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 1844202 19487487 ~ 19502643 (+)
LOC113533123 LOC108265628 other downstream 434062 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 478521 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 745434 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 1160465 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 1247373 22594534 ~ 22636989 (+)

Expression


Co-expression Network